View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6296_high_8 (Length: 353)
Name: NF6296_high_8
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6296_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 41806276 - 41806598
Alignment:
| Q |
15 |
aacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttt |
114 |
Q |
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| T |
41806276 |
aacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttt |
41806375 |
T |
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| Q |
115 |
tatctcttctggttcagaagagagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacc |
214 |
Q |
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| T |
41806376 |
tatctcttctggttcagaagagagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacc |
41806475 |
T |
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| Q |
215 |
tgtgattcttgcatttaggatctaactaacatcgttgagcatgaaataaaagtactagatgtagtctatattaatttctgatcctaaacaactagtgaat |
314 |
Q |
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| T |
41806476 |
tgtgattcttgcatttaggatctaactcccatcgttgagcatgaaataaaagtactagatgtagtctatattaatttctgatcctaaacaactagtgaat |
41806575 |
T |
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| Q |
315 |
attgatgtcacataagtatccta |
337 |
Q |
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| T |
41806576 |
attgatgtcacataagtatccta |
41806598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 135 - 320
Target Start/End: Complemental strand, 42034154 - 42033969
Alignment:
| Q |
135 |
agagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacctgtgattcttg-catttagg |
233 |
Q |
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| T |
42034154 |
agagaaacctacatcttgtgtttgtctaatg-tcaagtgaacttgcttggcattcaaagcaactcccattgtacgtagcctgtgattcttggcatttatg |
42034056 |
T |
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| Q |
234 |
atctaactaacatcgttgagcatgaaataaaagtactagatgtagtctatattaatttctgatcctaaacaactagtgaatattgat |
320 |
Q |
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| T |
42034055 |
atccaactcccatcattgagcatgaaataaaagtactagatgtagtctgtaataatttatgatcctaaacaactagtgaatattgat |
42033969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 41800166 - 41800270
Alignment:
| Q |
31 |
atatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatc-tttttcctgacttttctgtgctgcttgttttatc-tcttctggtt |
128 |
Q |
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|||||||||||||| ||||||||||||| || ||||| || || ||||||||| |||||||||| ||||||||||| ||||||||||| |||||| ||| |
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| T |
41800166 |
atatttagaagattcacggcttgtgtttttctacctcgtttgagctcctacatcttttttcctgaattttctgtgcttcttgttttatcttcttctagtt |
41800265 |
T |
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| Q |
129 |
cagaa |
133 |
Q |
| |
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||||| |
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| T |
41800266 |
cagaa |
41800270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 24631956 - 24632035
Alignment:
| Q |
15 |
aacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
94 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| | |||| |||||||||||| |||| ||||||||||||| |
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| T |
24631956 |
aacattagtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctga |
24632035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 24685335 - 24685444
Alignment:
| Q |
9 |
gagaagaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgc |
108 |
Q |
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||||| |||||| ||||||| || |||||||||||| |||||| |||||||| |||||| || || ||||| |||||||||||| || ||| |||| | |
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| T |
24685335 |
gagaaaaacagtggtaagtgcaacatttagaagattcgcggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttc |
24685434 |
T |
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| Q |
109 |
ttgttttatc |
118 |
Q |
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| |||||||| |
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| T |
24685435 |
tggttttatc |
24685444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 24653635 - 24653664
Alignment:
| Q |
15 |
aacagtagtaagtgaaatatttagaagatt |
44 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24653635 |
aacagtagtaagtgaaatatttagaagatt |
24653664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 278511 - 278393
Alignment:
| Q |
17 |
cagtagtaagtgaaatatttagaagatttacgg--cttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttt |
114 |
Q |
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|||||||||| || | |||||||||||| | || ||| ||||||| | ||||||| || ||||| ||||||||||||| ||||||||||| | |||| |
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| T |
278511 |
cagtagtaagggagacatttagaagattcatgggccttctgtttgtta-cctcatttgagctcctagatctttttcctgaattttctgtgcttgtggttt |
278413 |
T |
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| Q |
115 |
tat-ctcttctggttcagaa |
133 |
Q |
| |
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||| |||||||||||||||| |
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| T |
278412 |
tatcctcttctggttcagaa |
278393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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