View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6296_low_12 (Length: 258)
Name: NF6296_low_12
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6296_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 31965081 - 31965316
Alignment:
| Q |
5 |
tggaaaaccaattgaaacggaaggtatgaccaatgcatatttctcaacttgaaatagccatgaaatctgagggtaaaatttgagatattgtttgacagga |
104 |
Q |
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| T |
31965081 |
tggaaaaccaattgaaacggaaggtatgaccaatgcatattcctcaacttgaaatagccatgaaatctgagggtaaaatttgagatattgtttgacagga |
31965180 |
T |
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| Q |
105 |
aggaaaagggaacttaaggatagggagaagtctcaagaattatattttgaagtgaaagctgaggttgaaagatgtatcgcttatttgaaggagaaacgag |
204 |
Q |
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| T |
31965181 |
aggaaaagggaacttaaggatagggagaagtctcaagaattatattttgaagtgaaagctgaggttgaaagatgtatcgcttatttgaaggagaaacgag |
31965280 |
T |
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| Q |
205 |
aaagtgacccctacagaagtatactgtctcggttat |
240 |
Q |
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| T |
31965281 |
aaagtgacccctacagaagtatactgtctcggttat |
31965316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 31950801 - 31951036
Alignment:
| Q |
5 |
tggaaaaccaattgaaacggaaggtatgaccaatgcatatttctcaacttgaaatagccatgaaatctgagggtaaaatttgagatattgtttgacagga |
104 |
Q |
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| T |
31950801 |
tggaaaaccaattgaaacagaaggtatgtccaatgcatatttctcaacatgaaatagccgtgaaatgtgacggtaaaatttgagctattgtttgacagga |
31950900 |
T |
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| Q |
105 |
aggaaaagggaacttaaggatagggagaagtctcaagaattatattttgaagtgaaagctgaggttgaaagatgtatcgcttatttgaaggagaaacgag |
204 |
Q |
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| T |
31950901 |
aggaaacaggaacttaaggacaagaagaagtctcaagaattatattttgaagtgaaagccgaggttgaaagatgtatcgcatatttgaaggagaaacgag |
31951000 |
T |
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| Q |
205 |
aaagtgacccctacagaagtatactgtctcggttat |
240 |
Q |
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| T |
31951001 |
aaagtgacccctacagaagcatattgtctcggttat |
31951036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 31976913 - 31977065
Alignment:
| Q |
88 |
gatattgtttgacaggaaggaaaagggaacttaaggatagggagaagtctcaagaattatattttgaagtgaaagctgaggttgaaagatgtatcgctta |
187 |
Q |
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| T |
31976913 |
gatattgtttaacaggaaggaaacaggaacttaaagacagagagaactctcaagaattatatcttgaagtgcaatctgaggttgagagatgtattgctta |
31977012 |
T |
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| Q |
188 |
tttgaaggagaaacgagaaagtgacccctacagaagtatactgtctcggttat |
240 |
Q |
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| T |
31977013 |
tttaaaagagaaacgagaaagcgatccttacagaagtatagtgtctcggttat |
31977065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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