View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6296_low_3 (Length: 452)
Name: NF6296_low_3
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6296_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 235 - 441
Target Start/End: Complemental strand, 21751008 - 21750804
Alignment:
| Q |
235 |
atttttcttgtattcgcatccccttgcttaacccaatctttccaactattcaagacaacagtagttgccaatgcttctcgacacactaaaagtcgcttaa |
334 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
21751008 |
atttttcttgtattctcacccccttgcttaacccaatctttccaactattcaatacaacggtagttgccaaagcttcacgacacactaaaagtcgcttaa |
21750909 |
T |
|
| Q |
335 |
gtaaaatgtaatgagaagcaa-ccttgtttttgcaactttcaataattctagttttgaatttgatctatatatggctaatgcttggctatgattaataat |
433 |
Q |
| |
|
|||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||| || ||||||||||||||||| |
|
|
| T |
21750908 |
gtaagatataatgagaagcaattcttgtttttgcaactttcaataattc---ctttgaatttgatatataaatggctaacgcctggctatgattaataat |
21750812 |
T |
|
| Q |
434 |
gtatttca |
441 |
Q |
| |
|
|||||||| |
|
|
| T |
21750811 |
gtatttca |
21750804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 14518996 - 14519061
Alignment:
| Q |
36 |
gggtatacatagtcgatacgctattccggttcgtggtacgtgctaatatattaatcggtacgttat |
101 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||| ||||| ||||||| |||||| ||||||||||| |
|
|
| T |
14518996 |
gggtatgcatagtccgtacgctattgcggttcgcggtacatgctaatgtattaaccggtacgttat |
14519061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 33321346 - 33321426
Alignment:
| Q |
17 |
aaagaatcgggtacgtagggg-gtatacatagtcgatacgctattccggttcgtggtacgtgctaatatattaatcggtac |
96 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33321346 |
aaagaatcaggtacgtaggggggtatacatagttggtacgctatttcggttcgcggtacgtgctaatatattaatcggtac |
33321426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 39849979 - 39850062
Alignment:
| Q |
17 |
aaagaatcgggtacgtagggggtatacatagtcgatacgctattccggttcgtggtacgtgctaatatattaatcggtacgttat |
101 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||| |||||||||| |
|
|
| T |
39849979 |
aaagaattgggtacgt-gggggtatacatagtcggtacgctatttcggttcgcgttacgtgctaatgtattaattggtacgttat |
39850062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University