View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6296_low_4 (Length: 442)

Name: NF6296_low_4
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6296_low_4
NF6296_low_4
[»] chr2 (6 HSPs)
chr2 (16-363)||(35370922-35371277)
chr2 (217-279)||(28282670-28282732)
chr2 (217-279)||(16576268-16576330)
chr2 (205-299)||(16576425-16576519)
chr2 (217-282)||(16863476-16863541)
chr2 (218-271)||(35373728-35373781)
[»] chr5 (5 HSPs)
chr5 (205-278)||(2243310-2243383)
chr5 (233-299)||(7113758-7113824)
chr5 (217-278)||(7215291-7215351)
chr5 (207-246)||(972839-972878)
chr5 (207-243)||(14258907-14258943)
[»] chr7 (2 HSPs)
chr7 (213-272)||(34891381-34891440)
chr7 (208-302)||(34891544-34891638)
[»] chr8 (3 HSPs)
chr8 (213-301)||(32166606-32166694)
chr8 (207-282)||(37010335-37010410)
chr8 (77-110)||(9964275-9964308)
[»] chr4 (3 HSPs)
chr4 (227-299)||(22050727-22050796)
chr4 (213-270)||(54000218-54000275)
chr4 (230-286)||(25062352-25062408)
[»] chr1 (5 HSPs)
chr1 (205-283)||(7749011-7749089)
chr1 (217-278)||(68117-68178)
chr1 (217-278)||(52432681-52432742)
chr1 (144-178)||(39734322-39734356)
chr1 (205-278)||(35956991-35957064)
[»] chr3 (2 HSPs)
chr3 (217-286)||(20519282-20519351)
chr3 (205-270)||(42091793-42091858)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 35370922 - 35371277
Alignment:
Q  16 taggtgtttaaaatcaatatattgagcaaaaggaagtaccattataca------tatatagctcaacaaaaatatatatagaccaacaatatttgcatac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35370922 taggtgtttaaaatcaatatattgagcaaaaggaagtaccattatacaatatcatatatagctcaacaaaaatatatatagaccaacaatatttgtatac 35371021  T
Q  110 tagtannnnnnnnnnnnn---aaagttcggggggacc-tggcctctgttggtcccctttctagcttcatctctggtgtcacgaatagannnnnnnnnnna 205  Q
    |||||                ||||||| |||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||           |    
T  35371022 tagtataattttattttttttaaagttcagggggaccgtggcctctgttggtcccccttctagctccatctttggtgtcacgaatagattttttttt--a 35371119  T
Q  206 caattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatcttacct 305  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  35371120 caatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctttgtttgataattgaatcttacct 35371219  T
Q  306 ttaaaactatatcatgctatgctaagaaacatggcatagaaatccatggatgaagaga 363  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35371220 ttaaaactatatcatgctatgctaagaaacatggcatagaaattcatggatgaagaga 35371277  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 28282670 - 28282732
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctc 279  Q
    ||||||||| || | ||||||||||||||||||   ||||||| |||||||||||||||||||    
T  28282670 cattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctc 28282732  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 16576268 - 16576330
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctc 279  Q
    ||||||| | |||||||||||||||||||| ||  |||||||| || ||||||||||| ||||    
T  16576268 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 16576330  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 16576425 - 16576519
Alignment:
Q  205 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 299  Q
    ||||| ||||||||||||||| |||| |||| ||||| |||| ||  ||||||||||| |||  |||||||||| ||| |||  || ||||||||    
T  16576425 acaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatc 16576519  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 16863476 - 16863541
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctt 282  Q
    ||||||||| |||||||||||||| ||||| ||   ||| ||| |||||||||||| |||||||||    
T  16863476 cattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctcctt 16863541  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 35373728 - 35373781
Alignment:
Q  218 attttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatc 271  Q
    |||||||| |||||||| |||||||||||  ||||||||||| || ||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtgatc 35373781  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 2243383 - 2243310
Alignment:
Q  205 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 278  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| ||  |||||||| || |||||||||||||||    
T  2243383 acaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 7113824 - 7113758
Alignment:
Q  233 acatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 299  Q
    |||||||| |||||||| |||||||||||| ||||||| | |||||| ||||||  |||||||||||    
T  7113824 acatcaaatttctttatcaccttcatttaagatgtgatttacatctcttttgttccataattgaatc 7113758  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 7215351 - 7215291
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 278  Q
    ||||||||| ||||||||||||||||||||| |   ||||||| ||||||||||||||||||    
T  7215351 cattttcatctcaagaacatcaaacttcttt-tcttcttcattgaatatgtgatctccatct 7215291  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 972839 - 972878
Alignment:
Q  207 aattatttatcattttcatatcaagaacatcaaacttctt 246  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttctt 972878  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 14258943 - 14258907
Alignment:
Q  207 aattatttatcattttcatatcaagaacatcaaactt 243  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  14258943 aattatttatcattttcatctcaaaaacatcaaactt 14258907  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 34891381 - 34891440
Alignment:
Q  213 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatct 272  Q
    ||||||||||||||| |||||||||||||||||||||   |||||||||| |||||||||    
T  34891381 ttatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 34891544 - 34891638
Alignment:
Q  208 attatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatctta 302  Q
    |||| |||||||||| || |||||||||||||| ||||| ||  |||||||| || ||||||||||||| | ||| |||  | ||||||||||||    
T  34891544 attagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattgaatctta 34891638  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 32166694 - 32166606
Alignment:
Q  213 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatctt 301  Q
    ||||||||||||| |||||||||||||||||||| ||  |||| ||| || |||| |||| |||||| || |||| | |||||||||||    
T  32166694 ttatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatctt 32166606  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 37010410 - 37010335
Alignment:
Q  207 aattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctt 282  Q
    ||||| ||| ||||||||| |||| |||||||||||| || ||| | ||||||||| |||||||||| ||||||||    
T  37010410 aattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctcctt 37010335  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 9964275 - 9964308
Alignment:
Q  77 aaaaatatatatagaccaacaatatttgcatact 110  Q
    ||||||||||||||||||| ||||||||||||||    
T  9964275 aaaaatatatatagaccaaaaatatttgcatact 9964308  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 22050727 - 22050796
Alignment:
Q  227 tcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 299  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||||   ||||||||| ||||| |||||    
T  22050727 tcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcca---cctttgtttcataatcgaatc 22050796  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 54000275 - 54000218
Alignment:
Q  213 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgat 270  Q
    |||||||||| || | || ||||||||||||||||||  ||||||||||| |||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtgat 54000218  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 25062352 - 25062408
Alignment:
Q  230 agaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtt 286  Q
    ||||||||||||||||| ||   ||||||| || ||||||||| |||||||||||||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgtt 25062408  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 7749011 - 7749089
Alignment:
Q  205 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctccttt 283  Q
    ||||| || ||| |||||||| |||||||||||||| ||||| |||  |||  ||||| ||||||||||||||||||||    
T  7749011 acaatcatatattattttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctccttt 7749089  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 68117 - 68178
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 278  Q
    |||||| || ||||||||||| |||||||| ||  ||||||||||| |||||||||||||||    
T  68117 catttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 52432681 - 52432742
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 278  Q
    ||||||||| |||||||||| ||||||||| ||  ||||||||||| | |||||||||||||    
T  52432681 cattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 39734356 - 39734322
Alignment:
Q  144 tggcctctgttggtcccctttctagcttcatctct 178  Q
    |||||||||||||||||| ||||||||||||||||    
T  39734356 tggcctctgttggtcccccttctagcttcatctct 39734322  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 35956991 - 35957064
Alignment:
Q  205 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 278  Q
    ||||||| ||| |||||| || |||| |||||||||||| |  ||| | || ||||||||||||||||||||||    
T  35956991 acaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatct 35957064  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 20519351 - 20519282
Alignment:
Q  217 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtt 286  Q
    ||||||||| |||||||| ||||| ||||| ||  | |||||| || |||||||||||||||||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgtt 20519282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 42091858 - 42091793
Alignment:
Q  205 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgat 270  Q
    ||||||| ||||||||||||| |||| |||||||||||| || ||  | ||||||||| |||||||    
T  42091858 acaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

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