View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6296_low_6 (Length: 388)
Name: NF6296_low_6
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6296_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 29016023 - 29016189
Alignment:
| Q |
13 |
aatatctgtacggggtattgatccaatttattatatttacatctttttcaaaagaaggtattgagccaatatttgtttagcaaattaggcaacatattac |
112 |
Q |
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| T |
29016023 |
aatatctgtacggggtatcgatccaatttattatatttatatctttttcaaaagaaggtattgacccaatatttgtttagcaaattaggcaacatattac |
29016122 |
T |
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| Q |
113 |
attgtttccgacaggaaatattttcatattttgtttttaagtgtattcccatatttcttgtcaaaac |
179 |
Q |
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| T |
29016123 |
attgtttccaacaggaaatattttcatattttgtttttaagtgtattcccatatttcttgtcaaaac |
29016189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 227 - 370
Target Start/End: Original strand, 29016237 - 29016380
Alignment:
| Q |
227 |
tctgaatctctggtagatatattatggttgactccattctacacttgttgcatttggtttgaatgtttatgaagcataaggttagcatggttagatgggt |
326 |
Q |
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| T |
29016237 |
tctgaatctctggtagatatattatggttgactccattctacacttgttgcatttggtttgaatgtttatgaagcataaggttagcatggttagatgggt |
29016336 |
T |
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| Q |
327 |
attagtgagcacatttttcttcatcaatttgattattataagtt |
370 |
Q |
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| T |
29016337 |
attagtgagcacatttttcttcatcaatttgattattataagtt |
29016380 |
T |
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