View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6296_low_7 (Length: 373)
Name: NF6296_low_7
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6296_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 12562231 - 12561886
Alignment:
| Q |
13 |
aatatataatgagagaagttccagtaactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaagaaattag |
111 |
Q |
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| T |
12562231 |
aatataaaatgagagaagttccactaactattgtttacgtttaaagggtaaaatgggaaatttacattaaaaaataagggtaaaattggaaagaaattag |
12562132 |
T |
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| Q |
112 |
gctacaccaaaaagttgttttgccatctagaaggatcaaattgatttgtaaaattattgtgaaagaaaacaaattcaatgaatacttagctaatgcttac |
211 |
Q |
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| T |
12562131 |
gctacaccaaaaagttgttttgccttctagaaggatcaaattgatttgtaaaattattgtaaaagaaaacaaattcaatgaatacttagctaatgcttac |
12562032 |
T |
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| Q |
212 |
tcattaaaaaaccattgaacaatgaaatgtgatttggaaaaacaaaaatatacacgtttgtaagagtattaaaatccgtagaaggaatcttgcgtgggtt |
311 |
Q |
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| T |
12562031 |
tcattaaaaaaccattgaacaatgaaatgtgatttgaaaaaacaaaaatatacacgtttgtaagagtattaaaatccgtagaaggaatcttgcgtgggtt |
12561932 |
T |
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| Q |
312 |
tacatgcaaaagggaagtgaaaatatacaagtatttaagttctggt |
357 |
Q |
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| T |
12561931 |
tacatgcaaaagggaagtgaaaatatacaagtatttaaattctggt |
12561886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 12562941 - 12562618
Alignment:
| Q |
13 |
aatatataatgagagaagttccagtaactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaagaaattag |
111 |
Q |
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| T |
12562941 |
aatatataatgagagaagttccggtaattgttgtttaggtttaaagggtaaactgagaaatttacattaaaaaataagggtcaaattggaaagaaagtag |
12562842 |
T |
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| Q |
112 |
gctacaccaaaaagttgttttgccatctagaaggatcaaattgatttgtaaaattattgtgaaagaaaacaaattcaatgaatacttagctaatgcttac |
211 |
Q |
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| T |
12562841 |
gttacaccaaaaagttgttttgccttctagaaggatcggactgatttgtaaaattattgagaaagaaaacaaattcaatgaatacttagctaatgtttac |
12562742 |
T |
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| Q |
212 |
tcattaaaaaaccattgaacaatgaaatgtgatttggaaaaacaaaaatatacacgtttgtaagagtattaaaatccgtagaaggaatcttgcgtgggtt |
311 |
Q |
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| T |
12562741 |
tgagcaaaaaaccgttgaacaatgaaaagagatttcaaaaaacaaaaatatacacgtatgtaagagtattaaaatccgtagaatgaatcttgtgtggatt |
12562642 |
T |
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| Q |
312 |
tacatgcaaaagggaagtgaaaat |
335 |
Q |
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| T |
12562641 |
tacatgcaaaagggaagtgaaaat |
12562618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 28381890 - 28381801
Alignment:
| Q |
36 |
gtaactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaa--ataagggtaaaattggaaagaaattaggctacaccaaaa |
123 |
Q |
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| T |
28381890 |
gtaattgttgttcagttttgaagggtaaaatgaaaaattcacattaaaagaataagggtaaaatgggaaagaaagtaggctacaccaaaa |
28381801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 27260621 - 27260707
Alignment:
| Q |
38 |
aactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaagaaattaggctacaccaaaa |
123 |
Q |
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| T |
27260621 |
aactgttgtttagttttcaagggtaaaatgtgaaattctcattaaaaagggagggtgtaattggaaaaaaaataggctacaccaaaa |
27260707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 13111606 - 13111692
Alignment:
| Q |
38 |
aactgttgtttaggtttaaagggtaaaatgagaaatttacattaaaaa-taagggtaaaattggaaagaaattaggctacaccaaaa |
123 |
Q |
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||||||||||||| ||| |||||||||||| |||||| ||||||||| ||||| ||||||||| ||| ||||||||| ||||| |
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| T |
13111606 |
aactgttgtttagttttcaagggtaaaatgtgaaattctcattaaaaagggagggtgtaattggaaaaaaaataggctacatcaaaa |
13111692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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