View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6296_low_9 (Length: 347)
Name: NF6296_low_9
Description: NF6296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6296_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 13397142 - 13396821
Alignment:
| Q |
19 |
aacaagatccctcatagagtaatgttgaacattaatctgattatttctcaaagaaaagcatctcccagagacacttctccgatgatttataccaccagaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13397142 |
aacaagatccctcatagagtaatgttgaacattaatctgattatttctcaagaaagagcatcttccagagacacttctccgatgatttataccaccagaa |
13397043 |
T |
|
| Q |
119 |
tgtgggagttcaagaacattagagatctcctgatgttttaacattttatgcaacatcctaggttgtttttcattctggccttcttgttgtggaacccatt |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
13397042 |
tgtgggagttcaagaacattagagatcccctgatgtttcaacattttatgcaacatcctagattgtttttcattctgaccttcttgttgtggaacccatt |
13396943 |
T |
|
| Q |
219 |
tgtaagaattatttttagatctaattcccttcattaacatttctcctttcttattagttaccagataattagatttgttgaagtgtacttccatcccttg |
318 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
13396942 |
tgtaacaattatttttagatctaattcccttcattaacacttctcctttcttattagttaccggataatcagatttgttgaagtgtacttccatcccttg |
13396843 |
T |
|
| Q |
319 |
gtcacacaactgacctatgcta |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
13396842 |
gtcacacaactgacctatgcta |
13396821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 12387799 - 12387478
Alignment:
| Q |
19 |
aacaagatccctcatagagtaatgttgaacattaatctgattatttctcaaagaaaagcatctcccagagacacttctccgatgatttataccaccagaa |
118 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||||| ||||||| ||||| || | | ||||||| | ||||| ||||| | |||| |||||| | || || |
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| T |
12387799 |
aacaggatccataatagagtaaagttgaacatcaatctgagtatttatccagaaggagcatcttctagagatacttcccatatgacttatactatcaaaa |
12387700 |
T |
|
| Q |
119 |
tgtgggagttcaagaacattagagatctcctgatgttttaacattttatgcaacatcctaggttgtttttcattctggccttcttgttgtggaacccatt |
218 |
Q |
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||||| ||||||||| ||||||||| ||| ||||||| |||||| | || |||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
12387699 |
tgtggaagttcaagactattagagatttccagatgtttcaacattatgtggaacatcctaggttgtttttcattctgatagtcttgttgtggaacccact |
12387600 |
T |
|
| Q |
219 |
tgtaagaattatttttagatctaattcccttcattaacatttctcctttcttattagttaccagataattagatttgttgaagtgtacttccatcccttg |
318 |
Q |
| |
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|||| ||||||| |||| |||||| | ||||||| || || ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
12387599 |
tgtagcaattattagtagacctaatttcattcattagcacatcacctttcttattagttaccaaacaatcggatttgttgaagtgtacttccatcccttg |
12387500 |
T |
|
| Q |
319 |
gtcacacaactgacctatgcta |
340 |
Q |
| |
|
||| |||||||||| ||||||| |
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|
| T |
12387499 |
gtcgcacaactgacttatgcta |
12387478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 19196009 - 19195883
Alignment:
| Q |
192 |
tctggccttcttgttgtggaacccatttgtaagaattatttttagatctaattcccttcattaacatttctcctttcttattagttaccagataattaga |
291 |
Q |
| |
|
|||| ||||||| |||||| ||||| | ||| |||| | ||| ||||||| || |||||| ||||||||||||| || |||||||| | | | ||| |
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| T |
19196009 |
tctgaccttcttcttgtggtacccacatttaacaattttccttaaatctaatacctctcattagtatttctcctttctcatcagttaccaaacattcaga |
19195910 |
T |
|
| Q |
292 |
tttgttgaagtgtacttccatcccttg |
318 |
Q |
| |
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||||||||||| |||||||||||||| |
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|
| T |
19195909 |
tttgttgaagttcacttccatcccttg |
19195883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 25678752 - 25678829
Alignment:
| Q |
263 |
cctttcttattagttaccagataattagatttgttgaagtgtacttccatcccttggtcacacaactgacctatgcta |
340 |
Q |
| |
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||||||| || ||| |||||| | | |||||||||||||| || ||||||||||| ||||||||||| | ||||||| |
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|
| T |
25678752 |
cctttctcatcagtcaccagacattcagatttgttgaagttcacatccatcccttgatcacacaactggcttatgcta |
25678829 |
T |
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