View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6297_high_2 (Length: 472)
Name: NF6297_high_2
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6297_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 458
Target Start/End: Original strand, 13140529 - 13140990
Alignment:
| Q |
12 |
gtcaataatatctaaaactgttaaatatagtcagagaaatatgtaaaatgggataaatataattaaaagtgtcataggaaaaaga--------------- |
96 |
Q |
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| T |
13140529 |
gtcaataatatctaaaactgttaaatatagtcagagaaatatgtaaaatgggataaatataattaaaagtgtcataggaaaaagaaaaaaattcataaga |
13140628 |
T |
|
| Q |
97 |
aaaatactgatttctttaatatgtttaaaaaactttaaaccgtcattgagaagaaaaggcggtagtagtttcttggttagttagaacttagcttactgaa |
196 |
Q |
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| T |
13140629 |
aaaatactgatttctttaatatgtttaaaaaactttaaaccgtcattgagaaggaaaggcggtagtagtttcttggttagttataacttagcttactgaa |
13140728 |
T |
|
| Q |
197 |
tgcattgcaatccattggtgcatgaggatgagaggatatttcatgttttttctagcacttgttccttttacttttatcttaaacaaattcaattcatcgg |
296 |
Q |
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| T |
13140729 |
tgcattgcaatccattggtgcgtgaggatgagaggatatttcatgttttttctagcacttgttccttttacttttatcttaaacaaattcaattcatcgc |
13140828 |
T |
|
| Q |
297 |
tctcaggatggaacaggtcaaagctacttgtgtatttgcggaacaagaggtggagtatgagctctgcgttatcatggatgttgtcaaccatcgtttgaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13140829 |
tctcaggatggaacaggtcaaagctacttgtgtatttgcggaacaagaggtggagtatgagctctgtgttatcatggatgttgtcaaccatcgtttgaaa |
13140928 |
T |
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| Q |
397 |
tcgatcaaggttccacaaggcactccaaggattgaaatgtggaagactcccttttatgatga |
458 |
Q |
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| T |
13140929 |
tcgatcaaggttccacaaggcactccaaggattgaaatgtggaagactcccttttatgatga |
13140990 |
T |
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