View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6297_high_3 (Length: 429)
Name: NF6297_high_3
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6297_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 143 - 413
Target Start/End: Original strand, 5787999 - 5788269
Alignment:
| Q |
143 |
tggattgtaaaaacgttctctcactcgcattgatctgcattgtcttcgccggcgtcggaggtcaatctccgtcgtcagctccgactacatcaccacctac |
242 |
Q |
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| T |
5787999 |
tggattgtaaaaacgttctctcactcgcattgatctgcattgtcttcgccggcgtcggaggtcaatctccgtcgtcagctccgactacatcaccacctac |
5788098 |
T |
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| Q |
243 |
cgtcaccactccttctgctgctcccgtcgcagcacctaccaaaccaaaatcacccgctccagtcgcttctccaaaatcatcaccaccagcttcatctccc |
342 |
Q |
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| T |
5788099 |
cgtcaccactccttctgctgctcccgtcgcagcacctaccaaaccaaaatcacccgctccagtcgcttctccaaaatcatcaccaccagcttcatctccc |
5788198 |
T |
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| Q |
343 |
actgctgcaactgtaactccggctgtttctccagctgctccagttccggttgctaaatctccagctgcatc |
413 |
Q |
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| T |
5788199 |
actgctgcaactgtaactccggctgtttctccagctgctccagttccggttgctaaatctccagctgcatc |
5788269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 5787872 - 5787957
Alignment:
| Q |
10 |
agatgaatcaaactaacacccgttgatcattttctgaccaaagaaacttcccctctataaatctttctgccacatttctcaaacct |
95 |
Q |
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| T |
5787872 |
agatgaatcaaactaacacccgttgatcattttctgaccaaagaaacttcccctctataaatctttctgccacatttctcaaacct |
5787957 |
T |
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