View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6297_high_8 (Length: 332)

Name: NF6297_high_8
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6297_high_8
NF6297_high_8
[»] chr7 (7 HSPs)
chr7 (37-324)||(43928488-43928775)
chr7 (36-324)||(45162001-45162292)
chr7 (36-324)||(29188444-29188734)
chr7 (36-324)||(25599054-25599333)
chr7 (81-296)||(21156741-21156956)
chr7 (36-287)||(3688416-3688662)
chr7 (36-116)||(19067669-19067749)
[»] chr4 (3 HSPs)
chr4 (17-324)||(24008385-24008692)
chr4 (239-324)||(52107555-52107640)
chr4 (36-188)||(5046017-5046169)
[»] chr6 (2 HSPs)
chr6 (38-313)||(19311035-19311311)
chr6 (36-115)||(19654002-19654081)
[»] chr2 (4 HSPs)
chr2 (82-318)||(33629183-33629419)
chr2 (152-324)||(23343973-23344145)
chr2 (36-115)||(23343812-23343891)
chr2 (124-206)||(36237753-36237836)
[»] chr8 (7 HSPs)
chr8 (38-317)||(42007545-42007822)
chr8 (39-248)||(25929236-25929445)
chr8 (90-324)||(26395135-26395356)
chr8 (36-287)||(17725427-17725673)
chr8 (17-206)||(28930705-28930891)
chr8 (36-116)||(3418357-3418437)
chr8 (59-101)||(26395493-26395535)
[»] chr1 (4 HSPs)
chr1 (65-182)||(4134668-4134785)
chr1 (36-216)||(4433121-4433301)
chr1 (36-116)||(34309170-34309250)
chr1 (36-115)||(23026615-23026694)
[»] chr3 (3 HSPs)
chr3 (36-216)||(13476234-13476414)
chr3 (36-206)||(45081252-45081423)
chr3 (124-206)||(46150580-46150662)
[»] chr5 (2 HSPs)
chr5 (75-161)||(22212873-22212959)
chr5 (17-63)||(41046317-41046360)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 37 - 324
Target Start/End: Original strand, 43928488 - 43928775
Alignment:
Q  37 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacacta 136  Q
    |||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        |||||||||||||    
T  43928488 cgttgacaccaaatctcaactattgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatcctttttttcaatcacacacta 43928587  T
Q  137 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaa 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43928588 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctgcaaaattgaaatactccatagttgaa 43928687  T
Q  237 taattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 324  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  43928688 taattaaaatacttcaaagatattattgtttagaatgaattggaaatattagttgttaaatgcaattcactctatgatctcttctcct 43928775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 45162001 - 45162292
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn---caatcacac 132  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||           |||||||||    
T  45162001 tcgttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatccttttttttttcaatcacac 45162100  T
Q  133 actattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagt 232  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  45162101 actattattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattctccttattctcttgtctgcaaaattgaaatattctatagt 45162200  T
Q  233 tgaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  45162201 tgaataattaaaatacttcaaagatattattgtttagaatgaattggaaatattagttgttaaatgcaattccctctatgatctcttctcct 45162292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 36 - 324
Target Start/End: Complemental strand, 29188734 - 29188444
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn--caatcacaca 133  Q
    ||||||||||||||||| || ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||          ||||||||||    
T  29188734 tcgttgacaccaaatctcaactgttgatcttatttaatcaaaagttaataatagtgccacatttttatttattgtgtatcttttttttttcaatcacaca 29188635  T
Q  134 ctattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagtt 233  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29188634 ctattattgtttttaatgattacaaaacctaaattggaaacataatcatatcataattctccttattctcttgtctgcaaaattgaaatactccatagtt 29188535  T
Q  234 gaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 324  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  29188534 gaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaatttcctctatgatctcttctcct 29188444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 324
Target Start/End: Original strand, 25599054 - 25599333
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  25599054 tcgttgacaccaaatctcaatcgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatcctttttttcaatcacacact 25599153  T
Q  136 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaa-ttgaaatactccatagttg 234  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  25599154 attattatttttaatgattacaaaacctaaattggaaacataatcctatcataattctccttattctcttgtctgcaaaatttgaaatactccatagttg 25599253  T
Q  235 aataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 324  Q
    ||||||||||||||||| ||          ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||    
T  25599254 aataattaaaatacttccaa----------ttttgaatgaattggaaatattagttgttaaatgcaattccttctatgatatcttctcct 25599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 81 - 296
Target Start/End: Complemental strand, 21156956 - 21156741
Alignment:
Q  81 taataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatc 180  Q
    |||| ||| |||||||||||||||||  |||||||        ||||||||||| ||||||||||| |||||||||||||||  ||||| |||||| |||    
T  21156956 taattatagtgccacatttttatttacggtgtatcctttctttcaatcacacaccattattgttttcaatgattacaaaacccaaattgaaaacatgatc 21156857  T
Q  181 ctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaa 280  Q
      ||||| |  ||||||||||| |||| | ||||||| |||| |||||||  ||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  21156856 ggatcatgaccctccttattctattgttttcaaaattaaaatgctccataactgaataattaaaatacttccaagatattattgcttataatgaattgaa 21156757  T
Q  281 aatattagttgttaaa 296  Q
    || |||||||| ||||    
T  21156756 aacattagttggtaaa 21156741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 3688416 - 3688662
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    |||||||||||||||||||    || || |||||| || |||||||||| ||| || ||| |||||||||||||||||||        ||||||||||||    
T  3688416 tcgttgacaccaaatcttatccatttattttatttgatcaaaggttaattatagtgacacgtttttatttattgtgtatcctttctttcaatcacacact 3688515  T
Q  136 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttga 235  Q
    |||||||||||||||||||||||||||  || ||||||||  ||| |||||| || || ||| ||||||||||  |||| || ||||||||||||  | |    
T  3688516 attattgtttttaatgattacaaaacccaaactggaaacaagatcgtatcatgatcct-cttcttctcttgtc--caaagttaaaatactccataactaa 3688612  T
Q  236 ataattaaaatacttcaaagatattattgtttagaatgaattgaaaatatta 287  Q
    |||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||    
T  3688613 ataa-taagatacttc-aagatattatcgtttagaattaattgaaaatatta 3688662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 19067669 - 19067749
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 116  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  19067669 tcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 19067749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 24008385 - 24008692
Alignment:
Q  17 atatataagtcaggatccgtcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 116  Q
    |||||| |||||||||||||   ||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||     
T  24008385 atatatgagtcaggatccgt---tgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatct 24008481  T
Q  117 nnnnnnn---caatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaa 213  Q
              |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24008482 ttttttttttcaatcacacactattattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattctccttattctcttgtctgcaa 24008581  T
Q  214 aattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatga 313  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  24008582 aattgaaatactgcatagttgaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaattccctctatga 24008681  T
Q  314 tctctgctcct 324  Q
    ||||| |||||    
T  24008682 tctcttctcct 24008692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 52107640 - 52107555
Alignment:
Q  239 attaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 324  Q
    ||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  52107640 attaaaatacttccaaaatattattgtttagaacgaattggaaatattagttgttaaatgcaattccctatatgatctcttctcct 52107555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 5046017 - 5046169
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    ||||||||||||||||| ||  ||| || ||||||||| ||||| ||||  || ||||| |||| | |||||||||||||          ||||||||||    
T  5046017 tcgttgacaccaaatctcaaccgtttattttatttaatcaaaggctaattttagtgccatatttctctttattgtgtatcctttcttgtgatcacacact 5046116  T
Q  136 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcata 188  Q
    |||||||| ||||||||||| |||||   |||||||||||| ||| |||||||    
T  5046117 attattgtatttaatgattataaaactcaaattggaaacatgatcttatcata 5046169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 38 - 313
Target Start/End: Original strand, 19311035 - 19311311
Alignment:
Q  38 gttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn-caatcacacacta 136  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||         |||||||||||||    
T  19311035 gttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatccttttttttcaatcacacacta 19311134  T
Q  137 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaa 236  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  19311135 ttattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattctcattattctcttgtctgcaaaattgaaatactccatagttgaa 19311234  T
Q  237 taattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatga 313  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  19311235 taattaaaatacttcaaagatattattgtttagaaagaattggaaatattagttgttaaatgcaattccctctatga 19311311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 19654002 - 19654081
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 115  Q
    ||||||||||||||||||||  ||| || ||||||||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  19654002 tcgttgacaccaaatcttaaccgtttattttatttaatcaaaggctaattataataccacatttttatttattgtgtatc 19654081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 82 - 318
Target Start/End: Complemental strand, 33629419 - 33629183
Alignment:
Q  82 aataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcc 181  Q
    ||||||| || |||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33629419 aataatagtgtcacatttttatttattgtgtatccttttattcaatcacacactattattatttttaatgattacaaaacctaaattggaaacataatcc 33629320  T
Q  182 tatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaaa 281  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  33629319 tatcataattctccttattctcttgtctgcaaaattgaaataccccatagttgaataattaaaatacttccaagatattattgtttagaatgaattggaa 33629220  T
Q  282 atattagttgttaaatgcaattccctctatgatctct 318  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33629219 atattagttgttaaatgaaattccctctatgatctct 33629183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 152 - 324
Target Start/End: Original strand, 23343973 - 23344145
Alignment:
Q  152 attacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttc 251  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  23343973 attacaaaacctaaattggaaacataatcctatcataattctctttattctcttgtctgcaaaattgaaatattttatagttgaataattaaaatacttc 23344072  T
Q  252 aaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 324  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  23344073 aaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaatttcctctatgatctcttctcct 23344145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 23343812 - 23343891
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 115  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  23343812 tcgttgacatcaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatc 23343891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 36237753 - 36237836
Alignment:
Q  124 caatcacacactattattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcataattctccttattctcttg 206  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||| ||| |||||| || || || |||||||||    
T  36237753 caatcacacactattattgttttcaatgatttacaaaaccgaaattggaaacatgatcatatcatgatcctactcattctcttg 36237836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 38 - 317
Target Start/End: Original strand, 42007545 - 42007822
Alignment:
Q  38 gttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactat 137  Q
    ||||||||||||||| ||  ||| || ||||||||| || |||||||| || || ||| ||| ||||||||||||||||       |||||||||| |||    
T  42007545 gttgacaccaaatctcaaccgttaattttatttaatcaatggttaatagtagtgtcacgtttgtatttattgtgtatcatttttt-caatcacacattat 42007643  T
Q  138 tattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaat 237  Q
    ||||| |||||||||||||||||| | |||||||||| || || ||||||||||||| ||||||||| || | ||||| | ||||||||||||  || ||    
T  42007644 tattgattttaatgattacaaaacttaaattggaaactta-tcgtatcataattctctttattctctggtttgcaaaaataaaatactccataactggat 42007742  T
Q  238 aattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctc 317  Q
    |||||||||||||| |||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  42007743 aattaaaatacttccaagatattattgtttaaaatgaatgaaaaatattagttggtaaatgcaattccctctatgatctc 42007822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 25929445 - 25929236
Alignment:
Q  39 ttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactatt 138  Q
    |||||||||||||| || ||||| | ||||||||| |||||||||||||||| |||| |||||||||||||||||||        |||||||||||||||    
T  25929445 ttgacaccaaatctcaactgttgtttttatttaatcaaaggttaataataatcccacgtttttatttattgtgtatcttttttttcaatcacacactatt 25929346  T
Q  139 attgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaata 238  Q
    ||||||||||||||||||||||||  ||||| |||||| ||| |||||||||||| |||||||| |||||| ||||||| ||||||||||||  ||||||    
T  25929345 attgtttttaatgattacaaaacccaaattgaaaacatgatcatatcataattcttcttattcttttgtctgcaaaattaaaatactccataactgaata 25929246  T
Q  239 attaaaatac 248  Q
    ||||||||||    
T  25929245 attaaaatac 25929236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 324
Target Start/End: Complemental strand, 26395356 - 26395135
Alignment:
Q  90 tgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataa 189  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||   |||  ||||| |||||| ||||||||||||    
T  26395356 tgccacatttttatttattgtgtatctttttttt-aatcacacactattattgtttttaatgattaccgtacccaaattgaaaacatgatcctatcataa 26395258  T
Q  190 ttctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagt 289  Q
    |||||         |||||| ||||||||||||||||||||  | ||||||||||||||||  ||||||||||| |||||||||||||| |||||| |      
T  26395257 ttctc---------ttgtctgcaaaattgaaatactccataactaaataattaaaatacttgcaagatattattttttagaatgaattggaaatatca-- 26395169  T
Q  290 tgttaaatgcaattccctctatgatctctgctcct 324  Q
      ||||||||||||| ||||||||||||| |||||    
T  26395168 -attaaatgcaattctctctatgatctcttctcct 26395135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 17725673 - 17725427
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    |||||||||||||||| ||    || || |||||| || |||||||||| ||| || ||| |||||||||||||||||||        ||||||||||||    
T  17725673 tcgttgacaccaaatcctatccatttattttatttgatcaaaggttaattatagtgacacgtttttatttattgtgtatcctttctttcaatcacacact 17725574  T
Q  136 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttga 235  Q
    |||||||||||||||||||||||||||  || ||||||||  ||| |||||| || || ||| ||||||||||  |||| || ||||||||||||  | |    
T  17725573 attattgtttttaatgattacaaaacccaaactggaaacaagatcgtatcatgatcct-cttcttctcttgtc--caaagttaaaatactccataaataa 17725477  T
Q  236 ataattaaaatacttcaaagatattattgtttagaatgaattgaaaatatta 287  Q
    |||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||    
T  17725476 ataa-taagatacttc-aagatattatcgtttagaattaattgaaaatatta 17725427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 28930891 - 28930705
Alignment:
Q  17 atatataagtcaggatccgtcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 116  Q
    |||||| |||||||||||||   ||||||||||||| |   |||||| | |||| || || |||||| |||| |||||||||||||||||||||||| |     
T  28930891 atatatgagtcaggatccgt---tgacaccaaatctcatccgttgat-taatttgatcaagggttaaaaatagtgccacatttttatttattgtgtaccc 28930796  T
Q  117 nnnnnnncaatcacacactattattgtttttaatg-attacaaaacctcaattggaaacataatcctatcataattctccttattctcttg 206  Q
           |||||||||||||||||||||||||||| ||||||||||   |||||||||||| ||| |||||| || || || |||||||||    
T  28930795 ttcttttcaatcacacactattattgtttttaatgaattacaaaactgaaattggaaacatgatcatatcatgatcctactcattctcttg 28930705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 3418437 - 3418357
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 116  Q
    ||||||||||||||  | ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  3418437 tcgttgacaccaaacttcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 3418357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 26395535 - 26395493
Alignment:
Q  59 ttgatcttatttaatgaaaggttaataataatgccacattttt 101  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||    
T  26395535 ttgattttatttaatcaaaggttaataatagtgccacattttt 26395493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 4134785 - 4134668
Alignment:
Q  65 ttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctc 164  Q
    ||||| ||| |||||||||| ||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||      
T  4134785 ttattaaatcaaaggttaattatagtgccacatttttatttattgtgtatcatttctttcaatcacacactattattgtttttaatgattacaaaaccca 4134686  T
Q  165 aattggaaacataatcct 182  Q
    |||| ||||||| |||||    
T  4134685 aattagaaacattatcct 4134668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 4433121 - 4433301
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    ||||||||||||||||| |   |||||| | |||| || |||||||||  ||| |||||||||||||||||||||| |||        ||||||||||||    
T  4433121 tcgttgacaccaaatctcatccgttgatttaatttgatcaaaggttaaatatagtgccacatttttatttattgtgcatcctttctttcaatcacacact 4433220  T
Q  136 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaat 216  Q
    ||||||||||| ||||||||||||||   ||||||||| || ||| |||| | |||||||||||||| |||||| ||||||    
T  4433221 attattgttttaaatgattacaaaactcaaattggaaagatgatcgtatcttgattctccttattcttttgtctgcaaaat 4433301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 34309250 - 34309170
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 116  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  34309250 tcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 34309170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 23026615 - 23026694
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 115  Q
    ||||||||| ||||||| || | || || ||||||||| |||| ||||| ||| |||||| ||| |||||||||||||||    
T  23026615 tcgttgacatcaaatctcaactatttattttatttaatcaaagattaattatagtgccacgtttatatttattgtgtatc 23026694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 216
Target Start/End: Original strand, 13476234 - 13476414
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    ||||||||||||||||| |   |||||| | |||| || |||||||||  ||| ||||||||||||||||||||||||||        ||| ||||||||    
T  13476234 tcgttgacaccaaatctcatccgttgatttaatttgatcaaaggttaaatatagtgccacatttttatttattgtgtatcctttctttcaaccacacact 13476333  T
Q  136 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaat 216  Q
    ||||||||||| ||||||||||||||   ||||||||| || ||| |||| | |||||||||||||| |||||| ||||||    
T  13476334 attattgttttaaatgattacaaaactcaaattggaaagatgatcgtatcttgattctccttattcttttgtctgcaaaat 13476414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 45081423 - 45081252
Alignment:
Q  36 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 135  Q
    ||||||||||||||||| ||   || || |||||| || ||||| |||  |||  ||||||||||| ||||||||||| |        |||||||||| |    
T  45081423 tcgttgacaccaaatctcaaccatttattttatttgatcaaaggctaaatatagagccacatttttttttattgtgtacccttcttttcaatcacacatt 45081324  T
Q  136 attattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcataattctccttattctcttg 206  Q
    ||||||||||| ||||| ||||||||||  |||||||||||| ||| |||||| || || || |||||||||    
T  45081323 attattgttttcaatgatttacaaaaccgaaattggaaacatgatcatatcatgatcctactcattctcttg 45081252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 46150662 - 46150580
Alignment:
Q  124 caatcacacactattattgtttttaatgatt-acaaaacctcaattggaaacataatcctatcataattctccttattctcttg 206  Q
    ||||||||||||||||||||||  ||||||| ||||||||  |||||||||||| ||| |||||| || || || |||||||||    
T  46150662 caatcacacactattattgtttc-aatgatttacaaaaccgaaattggaaacatgatcatatcatgatcctactcattctcttg 46150580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 22212959 - 22212873
Alignment:
Q  75 aaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaac 161  Q
    |||||||||| |||||||||||||||||||||||||||||||       |||| |||||| ||||||||||||||||||||||||||    
T  22212959 aaaggttaattataatgccacatttttatttattgtgtatcatttctttcaattacacacgattattgtttttaatgattacaaaac 22212873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 41046360 - 41046317
Alignment:
Q  17 atatataagtcaggatccgtcgttgacaccaaatcttaattgttgat 63  Q
    ||||||||||||||||||||   ||||||||||||||||| ||||||    
T  41046360 atatataagtcaggatccgt---tgacaccaaatcttaatcgttgat 41046317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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