View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6297_low_1 (Length: 531)
Name: NF6297_low_1
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6297_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 512
Target Start/End: Original strand, 38406941 - 38407440
Alignment:
| Q |
14 |
gaagagaaaaggtaggccgtataaatgaaatttattaagaatctactaaacggta--ttcatgcattggttttgctgttataatagcctactgtgttgct |
111 |
Q |
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| T |
38406941 |
gaagagaaaaggtaggccgtataaatgaaatttattaagaatctactaaacggtacattcatgcattggttttgctgttatcatagcttactgtgctgct |
38407040 |
T |
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| Q |
112 |
tgtagaaactttattgcagannnnnnnacaggagatttcgttgcagctgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttgt |
211 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407041 |
tgtagaaactttattgcagatttttatacaggagatttcgttgcaactgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttgt |
38407140 |
T |
|
| Q |
212 |
gctgtgtaggcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttgag |
311 |
Q |
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| T |
38407141 |
gctgtgtaggcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttgag |
38407240 |
T |
|
| Q |
312 |
ctccaattggcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatggaatcaacaat |
411 |
Q |
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| T |
38407241 |
ctccaattggcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatgg-atcaacaat |
38407339 |
T |
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| Q |
412 |
gttgaggaaaagctggaaatatgaggtttgtgtgattcgcatatttttgaaaatattagcttgaaatatgaaagaaaaatgatataatgctatgaaatac |
511 |
Q |
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| T |
38407340 |
gttgaggaaaagcttgaaatatgaggtttgtgtgattcgcatatttttgaaaatattagcttgaaatatgaaagaaaaatgatataatgctatgaaatac |
38407439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 512
Target Start/End: Original strand, 45057755 - 45057788
Alignment:
| Q |
479 |
atgaaagaaaaatgatataatgctatgaaataca |
512 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
45057755 |
atgaaagaaaaaggatataatgctatgaaataca |
45057788 |
T |
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