View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6297_low_11 (Length: 251)

Name: NF6297_low_11
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6297_low_11
NF6297_low_11
[»] chr4 (7 HSPs)
chr4 (81-245)||(13140327-13140491)
chr4 (81-122)||(40293244-40293285)
chr4 (88-123)||(42853942-42853977)
chr4 (88-123)||(44272843-44272878)
chr4 (81-123)||(32871855-32871897)
chr4 (87-123)||(41609711-41609747)
chr4 (87-123)||(45521611-45521647)
[»] chr8 (9 HSPs)
chr8 (81-123)||(45108683-45108725)
chr8 (81-123)||(13592769-13592811)
chr8 (87-123)||(40380284-40380320)
chr8 (88-123)||(9985711-9985746)
chr8 (81-123)||(21467387-21467429)
chr8 (81-123)||(26629136-26629178)
chr8 (81-123)||(30170755-30170797)
chr8 (81-126)||(39031238-39031283)
chr8 (89-129)||(11138904-11138944)
[»] chr5 (14 HSPs)
chr5 (81-123)||(30838391-30838433)
chr5 (84-123)||(14780450-14780489)
chr5 (81-123)||(2629821-2629863)
chr5 (81-123)||(14062859-14062901)
chr5 (88-123)||(29803228-29803263)
chr5 (88-123)||(34428163-34428198)
chr5 (81-123)||(844039-844081)
chr5 (81-123)||(8728607-8728649)
chr5 (81-123)||(41621954-41621996)
chr5 (81-123)||(42446317-42446359)
chr5 (87-123)||(19844341-19844377)
chr5 (87-123)||(31748339-31748375)
chr5 (87-123)||(32872930-32872966)
chr5 (81-129)||(38097776-38097824)
[»] chr2 (16 HSPs)
chr2 (81-123)||(15123962-15124004)
chr2 (85-123)||(22303206-22303244)
chr2 (87-129)||(3366429-3366471)
chr2 (89-123)||(15141476-15141510)
chr2 (81-123)||(18423787-18423829)
chr2 (81-123)||(18510678-18510720)
chr2 (81-123)||(24727616-24727658)
chr2 (81-123)||(25507258-25507300)
chr2 (81-123)||(31415241-31415283)
chr2 (81-123)||(31629607-31629649)
chr2 (81-123)||(40874287-40874329)
chr2 (85-122)||(43621978-43622015)
chr2 (87-123)||(8427555-8427591)
chr2 (87-123)||(18531604-18531640)
chr2 (87-123)||(29168728-29168764)
chr2 (87-123)||(43791834-43791870)
[»] chr1 (12 HSPs)
chr1 (85-123)||(7078530-7078568)
chr1 (85-123)||(34395949-34395987)
chr1 (81-123)||(35883633-35883675)
chr1 (85-123)||(11097914-11097952)
chr1 (81-118)||(19476152-19476190)
chr1 (89-122)||(3977559-3977592)
chr1 (81-122)||(41619060-41619101)
chr1 (87-123)||(16234326-16234362)
chr1 (87-123)||(24673072-24673108)
chr1 (87-123)||(32915104-32915140)
chr1 (87-123)||(34008183-34008219)
chr1 (87-123)||(47214211-47214247)
[»] scaffold0178 (1 HSPs)
scaffold0178 (81-118)||(11579-11616)
[»] scaffold0016 (1 HSPs)
scaffold0016 (87-123)||(204477-204513)
[»] chr7 (10 HSPs)
chr7 (81-121)||(22588987-22589027)
chr7 (87-123)||(37385265-37385301)
chr7 (88-123)||(40693561-40693596)
chr7 (89-123)||(38547313-38547347)
chr7 (81-123)||(43573569-43573611)
chr7 (81-123)||(48395251-48395293)
chr7 (86-123)||(26153649-26153686)
chr7 (87-123)||(22638916-22638952)
chr7 (87-123)||(23910283-23910319)
chr7 (87-123)||(25614853-25614889)
[»] chr3 (12 HSPs)
chr3 (87-123)||(50559244-50559280)
chr3 (81-128)||(3282531-3282578)
chr3 (88-123)||(45528975-45529010)
chr3 (85-123)||(2482704-2482742)
chr3 (81-123)||(25188491-25188533)
chr3 (81-123)||(41850946-41850988)
chr3 (87-120)||(41637312-41637345)
chr3 (87-123)||(1402653-1402689)
chr3 (87-123)||(32146018-32146054)
chr3 (87-123)||(34900643-34900679)
chr3 (87-123)||(48352999-48353035)
chr3 (87-123)||(49417578-49417614)
[»] scaffold0578 (1 HSPs)
scaffold0578 (81-118)||(7005-7043)
[»] scaffold0449 (1 HSPs)
scaffold0449 (81-123)||(9206-9248)
[»] scaffold0041 (1 HSPs)
scaffold0041 (89-123)||(34411-34445)
[»] chr6 (7 HSPs)
chr6 (81-123)||(13093629-13093671)
chr6 (89-123)||(32644626-32644660)
chr6 (81-123)||(35213587-35213629)
chr6 (81-122)||(10840722-10840763)
chr6 (87-123)||(27334861-27334897)
chr6 (87-123)||(27395601-27395637)
chr6 (83-123)||(33683503-33683543)
[»] scaffold1625 (1 HSPs)
scaffold1625 (81-122)||(807-848)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 13140327 - 13140491
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttttcataaattctcttagatagtctaagtggttaggccagtagttaagttcaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13140327 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttttcataaattctcttagatagtctaagtggttaggccaatagttaagttcaaa 13140426  T
Q  181 ttagtcaattcaaacgtaccataagtattagttctttcagcaattttttgttactattcatctca 245  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  13140427 ttagtcaattcaaacgtaccataagtattagttccttcagcaattttttgttactatttatctca 13140491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 40293285 - 40293244
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 122  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  40293285 ttgtttcaaaaattgtcaaaaaattgatgtacaaatatcatt 40293244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 42853977 - 42853942
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42853977 aaaagttgtcaaaaaatagttgtacaaatatcattt 42853942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 44272843 - 44272878
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44272843 aaaagttgtcaaaaaatagttgtacaaatatcattt 44272878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 32871855 - 32871897
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||  |||||||||||||||    
T  32871855 ttgtttcaaaagttgtcaagaaatagtggtacaaatatcattt 32871897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 41609711 - 41609747
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  41609711 caaaagttgtcataaaatggatgtacaaatatcattt 41609747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 45521611 - 45521647
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  45521611 caaaagttgtcataaaatggatgtacaaatatcattt 45521647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 45108683 - 45108725
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45108683 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 45108725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 13592811 - 13592769
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  13592811 ttgtttcaaaagttgtcaaaaaataggtgtacaaatatcattt 13592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 40380320 - 40380284
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40380320 caaaagttgtcataaaatagatgtacaaatatcattt 40380284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 9985711 - 9985746
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9985711 aaaagttgtcataaaatagatgtacaaatatcattt 9985746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 21467429 - 21467387
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  21467429 ttgttttaaaagttgtcaaaaaataaatgtataaatatcattt 21467387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 26629136 - 26629178
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  26629136 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 26629178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 30170755 - 30170797
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  30170755 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 30170797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 39031238 - 39031283
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtt 126  Q
    |||||||||||||| | ||||||||  |||||||||||||||||||    
T  39031238 ttgtttcaaaagttataaaaaaataattgtacaaatatcatttgtt 39031283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 11138944 - 11138904
Alignment:
Q  89 aaagttgtcaaaaaatagatgtacaaatatcatttgttttt 129  Q
    |||||||||| ||||||| |||||||||||||||| |||||    
T  11138944 aaagttgtcacaaaatagttgtacaaatatcattttttttt 11138904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 30838391 - 30838433
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  30838391 ttgtttcaaaagttgtcaaaaagtagatgtacaaatatcattt 30838433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 14780450 - 14780489
Alignment:
Q  84 tttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  14780450 tttcaaaagttgtcaaaaagtagatgtacaaatatcattt 14780489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 2629863 - 2629821
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  2629863 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcattt 2629821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 14062859 - 14062901
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  14062859 ttgtttcaaaagttgttaaaaaatagatgttcaaatatcattt 14062901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 29803263 - 29803228
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29803263 aaaagttgtcaaaaaatagttgtacaaatatcattt 29803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 34428198 - 34428163
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34428198 aaaagttgtcaaaaaatagttgtacaaatatcattt 34428163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 844081 - 844039
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||||| | ||| ||||||||||||    
T  844081 ttgtttcaaaagttgtcaaaaaatggttgtgcaaatatcattt 844039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 8728607 - 8728649
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  8728607 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 8728649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 41621954 - 41621996
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  41621954 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 41621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 42446317 - 42446359
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  42446317 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 42446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 19844341 - 19844377
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  19844341 caaaagttatcaaaaaatagttgtacaaatatcattt 19844377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 31748375 - 31748339
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  31748375 caaaagttgtaaaaaaatagttgtacaaatatcattt 31748339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 32872930 - 32872966
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  32872930 caaaagttgtcaaaaaatagttgttcaaatatcattt 32872966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 38097824 - 38097776
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgttttt 129  Q
    |||||||||||||||| ||||||||  |||||| ||||||||| |||||    
T  38097824 ttgtttcaaaagttgttaaaaaataattgtacagatatcattttttttt 38097776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 15123962 - 15124004
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  15123962 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcattt 15124004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 22303244 - 22303206
Alignment:
Q  85 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  22303244 ttcaaaagttgtcaaaaaatagttgtacaaatatcattt 22303206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 3366429 - 3366471
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcatttgttttt 129  Q
    |||||||||| | |||||||||||||||||||||||| |||||    
T  3366429 caaaagttgtaataaaatagatgtacaaatatcattttttttt 3366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 15141510 - 15141476
Alignment:
Q  89 aaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||| ||||||||||||||||||||||||    
T  15141510 aaagttgtcataaaatagatgtacaaatatcattt 15141476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 18423787 - 18423829
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  18423787 ttgttttaaaagatatcaaaaaatagatgtacaaatatcattt 18423829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 18510720 - 18510678
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  18510720 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 18510678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 24727616 - 24727658
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  24727616 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 24727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 25507300 - 25507258
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  25507300 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 25507258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 31415241 - 31415283
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| || | |||||||||||||||    
T  31415241 ttgtttcaaaagttgtcaaaaagtaaacgtacaaatatcattt 31415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 31629649 - 31629607
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||    
T  31629649 ttgttccaaaagttgtcaaaaagtagttgtacaaatatcattt 31629607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 40874287 - 40874329
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||| ||||||| | ||||||||||||||||    
T  40874287 ttgtttcaaaagttgttaaaaaatggttgtacaaatatcattt 40874329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 43621978 - 43622015
Alignment:
Q  85 ttcaaaagttgtcaaaaaatagatgtacaaatatcatt 122  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  43621978 ttcaaaagttgtcataaaatagttgtacaaatatcatt 43622015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 8427591 - 8427555
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  8427591 caaaaattgtcaaaaaatagatgttcaaatatcattt 8427555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 18531640 - 18531604
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  18531640 caaaaattgtcaaaaaatagttgtacaaatatcattt 18531604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 29168764 - 29168728
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||| | ||||||||||||||||    
T  29168764 caaaagttgtcaaaaaatggttgtacaaatatcattt 29168728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 43791834 - 43791870
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  43791834 caaaagttgtcataaaatggatgtacaaatatcattt 43791870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 7078530 - 7078568
Alignment:
Q  85 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7078530 ttcaaaagttgtcacaaaatagatgtacaaatatcattt 7078568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 34395949 - 34395987
Alignment:
Q  85 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  34395949 ttcaaaagttgtcataaaatagatgtacaaatatcattt 34395987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 35883633 - 35883675
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  35883633 ttgtttcaaaagttgtcaaaaaataattgtacaaatatcattt 35883675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 11097914 - 11097952
Alignment:
Q  85 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11097914 ttcaaaagttgtcacaaaatggatgtacaaatatcattt 11097952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 19476152 - 19476190
Alignment:
Q  81 ttgtttcaaaagttgtc-aaaaaatagatgtacaaatat 118  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  19476152 ttgtttcaaaagttgtcaaaaaaatagatgtacaaatat 19476190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 3977592 - 3977559
Alignment:
Q  89 aaagttgtcaaaaaatagatgtacaaatatcatt 122  Q
    |||||||||| |||||||||||||||||||||||    
T  3977592 aaagttgtcacaaaatagatgtacaaatatcatt 3977559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 41619101 - 41619060
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 122  Q
    |||| ||||||||| ||||||||||| |||||||||||||||    
T  41619101 ttgtctcaaaagttatcaaaaaatagttgtacaaatatcatt 41619060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 16234326 - 16234362
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  16234326 caaaagttgtcataaaatggatgtacaaatatcattt 16234362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 24673108 - 24673072
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24673108 caaaagttgtcataaaatagatgttcaaatatcattt 24673072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 32915104 - 32915140
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  32915104 caaaagttgtcataaaatagatgttcaaatatcattt 32915140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 34008219 - 34008183
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  34008219 caaaagttgtcataaaatagatgttcaaatatcattt 34008183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 47214247 - 47214211
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  47214247 caaaagttgtcataaaatagatgttcaaatatcattt 47214211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 11579 - 11616
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatat 118  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11579 ttgtttcaaaagttgtcaaaaaataaatgtacaaatat 11616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 204477 - 204513
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||||||||||||||||    
T  204477 caaaagttgtcagaaaatagatgtacaaatatcattt 204513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 22588987 - 22589027
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcat 121  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  22588987 ttgtttcaaaagttgtcaaaaaatggttgtacaaatatcat 22589027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 37385265 - 37385301
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||| ||||||||||||||||    
T  37385265 caaaagttgtcaaaaaatagttgtacaaatatcattt 37385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 40693561 - 40693596
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40693561 aaaagttgtcaaaaaatagttgtacaaatatcattt 40693596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 38547313 - 38547347
Alignment:
Q  89 aaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||| ||||||||||||||||    
T  38547313 aaagttgtcaaaaaatagttgtacaaatatcattt 38547347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 43573569 - 43573611
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  43573569 ttgttgcaaaagttgtcacaaaatagatgttcaaatatcattt 43573611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 48395293 - 48395251
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  48395293 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 48395251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 26153686 - 26153649
Alignment:
Q  86 tcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  26153686 tcaaaagttgtcataaaatagttgtacaaatatcattt 26153649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 22638916 - 22638952
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  22638916 caaaagttgtcataaaatagatgttcaaatatcattt 22638952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 23910283 - 23910319
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||| | ||||||||||||||||    
T  23910283 caaaagttgtcaaaaaatggttgtacaaatatcattt 23910319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 25614853 - 25614889
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  25614853 caaaagttatcaaaaaatggatgtacaaatatcattt 25614889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 50559244 - 50559280
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||| ||||||||||||||||    
T  50559244 caaaagttgtcaaaaaatagttgtacaaatatcattt 50559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 3282578 - 3282531
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatttgtttt 128  Q
    |||||||||||||||||||||||||  | |||||||||||||| ||||    
T  3282578 ttgtttcaaaagttgtcaaaaaatacttatacaaatatcatttctttt 3282531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 45528975 - 45529010
Alignment:
Q  88 aaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45528975 aaaagttgtcaaaaaatagttgtacaaatatcattt 45529010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 2482704 - 2482742
Alignment:
Q  85 ttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  2482704 ttcaaaagttgtcacaaaatggatgtacaaatatcattt 2482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 25188491 - 25188533
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  25188491 ttgttgcaaaagttgtcaaaaaatagttgttcaaatatcattt 25188533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 41850988 - 41850946
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||||| || | ||||||||||||||||    
T  41850988 ttgtttcaaaagttgtcaaaatatggttgtacaaatatcattt 41850946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 41637312 - 41637345
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatca 120  Q
    |||||||||||||||||||| |||||||||||||    
T  41637312 caaaagttgtcaaaaaatagttgtacaaatatca 41637345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 1402689 - 1402653
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  1402689 caaaagttgtcataaaatggatgtacaaatatcattt 1402653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 32146018 - 32146054
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  32146018 caaaagttgtcaaaaaatagttgttcaaatatcattt 32146054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 34900679 - 34900643
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  34900679 caaaagttgtcataaaatagatgtacaattatcattt 34900643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 48353035 - 48352999
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  48353035 caaaagttgttaaaaaatggatgtacaaatatcattt 48352999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 49417614 - 49417578
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  49417614 caaaagttgtcataaaatagatgttcaaatatcattt 49417578  T

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Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 7005 - 7043
Alignment:
Q  81 ttgtttcaaaagttgtc-aaaaaatagatgtacaaatat 118  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7005 ttgtttcaaaagttgtcaaaaaaatagatgtacaaatat 7043  T

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Target: scaffold0449 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 9248 - 9206
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  9248 ttgtttcaaaagttgtcattaaatagatgttcaaatatcattt 9206  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 34445 - 34411
Alignment:
Q  89 aaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||| ||||||||||||||||    
T  34445 aaagttgtcaaaaaatagttgtacaaatatcattt 34411  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 13093671 - 13093629
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||||||| | | ||||||||||||||||    
T  13093671 ttgtttcaaaagttgtcaaaaagtggttgtacaaatatcattt 13093629  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 32644660 - 32644626
Alignment:
Q  89 aaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||||||||| ||||||||||||||||    
T  32644660 aaagttgtcaaaaaatagttgtacaaatatcattt 32644626  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 35213587 - 35213629
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||    
T  35213587 ttgttacaaaagttgtcacaaaatagatgttcaaatatcattt 35213629  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 10840763 - 10840722
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 122  Q
    ||||| |||||||||||||||||||  |||||||||||||||    
T  10840763 ttgttccaaaagttgtcaaaaaataattgtacaaatatcatt 10840722  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 27334897 - 27334861
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27334897 caaaagttgtcacaaaatagttgtacaaatatcattt 27334861  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 27395637 - 27395601
Alignment:
Q  87 caaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27395637 caaaagttgtcacaaaatagttgtacaaatatcattt 27395601  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 33683543 - 33683503
Alignment:
Q  83 gtttcaaaagttgtcaaaaaatagatgtacaaatatcattt 123  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  33683543 gtttcaaaagttgtcaaaaaataaatatataaatatcattt 33683503  T

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Target: scaffold1625 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 807 - 848
Alignment:
Q  81 ttgtttcaaaagttgtcaaaaaatagatgtacaaatatcatt 122  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  807 ttgtttcaaaagttgtcaaaaaatgattgtacaaatatcatt 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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