View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6297_low_12 (Length: 251)

Name: NF6297_low_12
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6297_low_12
NF6297_low_12
[»] chr5 (2 HSPs)
chr5 (1-228)||(15369499-15369724)
chr5 (1-51)||(16946302-16946352)
[»] chr8 (7 HSPs)
chr8 (1-51)||(9577711-9577761)
chr8 (1-51)||(13011029-13011079)
chr8 (1-51)||(13117861-13117911)
chr8 (1-51)||(13135597-13135647)
chr8 (1-51)||(18668981-18669031)
chr8 (2-51)||(13009789-13009838)
chr8 (1-51)||(26442009-26442059)
[»] chr7 (4 HSPs)
chr7 (1-51)||(41866262-41866312)
chr7 (1-51)||(28261754-28261804)
chr7 (1-52)||(48918554-48918605)
chr7 (1-44)||(31656835-31656878)
[»] chr4 (6 HSPs)
chr4 (1-52)||(56191432-56191483)
chr4 (1-51)||(23458689-23458739)
chr4 (1-51)||(42636416-42636466)
chr4 (1-51)||(56435080-56435130)
chr4 (1-44)||(20916804-20916847)
chr4 (1-43)||(31032771-31032813)
[»] scaffold0971 (1 HSPs)
scaffold0971 (1-51)||(1336-1386)
[»] scaffold0899 (1 HSPs)
scaffold0899 (1-51)||(2476-2526)
[»] chr6 (1 HSPs)
chr6 (1-51)||(29022886-29022936)
[»] chr2 (2 HSPs)
chr2 (1-51)||(2388831-2388881)
chr2 (1-44)||(35514128-35514171)
[»] chr1 (1 HSPs)
chr1 (1-51)||(45764995-45765045)
[»] chr3 (2 HSPs)
chr3 (1-44)||(26379277-26379320)
chr3 (1-44)||(29383704-29383747)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15369499 - 15369724
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagccagccttttcacnnnnnnngaccaattgttcggctttcttttgttgataca 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||       |||||||||||| |||||||||||||||||||    
T  15369499 cacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagccagccactttactttttttgaccaattgttctgctttcttttgttgataca 15369598  T
Q  101 gataaatgtgaattcgatcatatttcatcattcagagccttgcttatcccacccccacacaaacgttttgggagataaataataaataggggtcaaaaga 200  Q
    ||  ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15369599 ga--aatgttaattcgatcatatttcatcattaagagccttgcttatcccacccccacagaaacgttttgggagataaataataaataggggtcaaaaga 15369696  T
Q  201 gcaaacatttatcactagcttaagtata 228  Q
    ||||||||||||||||||||||||||||    
T  15369697 gcaaacatttatcactagcttaagtata 15369724  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16946352 - 16946302
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||  | |||||||||||    
T  16946352 cacgtcagtctaacacactgaaggtctccggttcgagtccgggcgaagcca 16946302  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9577711 - 9577761
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9577711 cacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagcca 9577761  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13011079 - 13011029
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13011079 cacgtcagtctaacacactgaaggtccccagttcaaacctgggcgaagcca 13011029  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13117861 - 13117911
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13117861 cacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 13117911  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13135597 - 13135647
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13135597 cacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 13135647  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18669031 - 18668981
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18669031 cacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 18668981  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 13009838 - 13009789
Alignment:
Q  2 acgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13009838 acgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 13009789  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26442059 - 26442009
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  26442059 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 26442009  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41866312 - 41866262
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41866312 cacgtcagtctaacacactgaaggtccccagttcgagcctgggcgaagcca 41866262  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28261804 - 28261754
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28261804 cacgtcagtctaacacactgaaggtccccagttctagcctgggcgaagcca 28261754  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 48918605 - 48918554
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagccag 52  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  48918605 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccag 48918554  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31656878 - 31656835
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggc 44  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||    
T  31656878 cacgttagtctcacacactaaaggtccccagttcgaacctgggc 31656835  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 56191483 - 56191432
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagccag 52  Q
    |||||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  56191483 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccag 56191432  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 23458739 - 23458689
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  23458739 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 23458689  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42636416 - 42636466
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  42636416 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 42636466  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 56435080 - 56435130
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  56435080 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 56435130  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20916847 - 20916804
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggc 44  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  20916847 cacgtcagtcttacacactgaaggtctccagttcgatcctgggc 20916804  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31032771 - 31032813
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctggg 43  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||    
T  31032771 cacgtcagtcttacacactgaaggtctccagttcgatcctggg 31032813  T

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Target: scaffold0971 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1386 - 1336
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  1386 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 1336  T

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Target: scaffold0899 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2476 - 2526
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  2476 cacgtcagtctaacacactgaaggtctccagtttgaaccagggcgaagcca 2526  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29022886 - 29022936
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  29022886 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 29022936  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2388831 - 2388881
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  2388831 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 2388881  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35514128 - 35514171
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggc 44  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  35514128 cacgtcagtcttacacactgaaggtctccagttcgatcctgggc 35514171  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 45765045 - 45764995
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggcgaagcca 51  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  45765045 cacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagcca 45764995  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26379320 - 26379277
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggc 44  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  26379320 cacgtcagtcttacacactgaaggtctccagttcgatcctgggc 26379277  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29383704 - 29383747
Alignment:
Q  1 cacgtcagtctaacacactgaaggtccccagttcgaacctgggc 44  Q
    ||||||||||| |||||||||||||| ||||||||| |||||||    
T  29383704 cacgtcagtcttacacactgaaggtctccagttcgatcctgggc 29383747  T

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