View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6297_low_15 (Length: 225)
Name: NF6297_low_15
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6297_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 33679306 - 33679496
Alignment:
| Q |
17 |
caaaggttaaagtactaccacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaat |
116 |
Q |
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| T |
33679306 |
caaaggttaaagtacaaccacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaat |
33679405 |
T |
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| Q |
117 |
gatggcaagacctttgatggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgac |
207 |
Q |
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| T |
33679406 |
gatggcaagacgtatgatggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgac |
33679496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 33686773 - 33686963
Alignment:
| Q |
17 |
caaaggttaaagtactaccacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaat |
116 |
Q |
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| T |
33686773 |
caaaggttaaagtacaaccacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaat |
33686872 |
T |
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| Q |
117 |
gatggcaagacctttgatggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgac |
207 |
Q |
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| T |
33686873 |
gatggcaagacgtatgatggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgac |
33686963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 33703827 - 33704017
Alignment:
| Q |
17 |
caaaggttaaagtactaccacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaat |
116 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33703827 |
caaaggttaaagtacaaccacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaat |
33703926 |
T |
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| Q |
117 |
gatggcaagacctttgatggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgac |
207 |
Q |
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| T |
33703927 |
gatggcaagacgtatgatggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgac |
33704017 |
T |
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