View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6297_low_4 (Length: 402)
Name: NF6297_low_4
Description: NF6297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6297_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 612257 - 612049
Alignment:
| Q |
8 |
aaaaataccaaactacccttcttattttccaacataaaaaatattctctctatc--aattatacagttctgtgctatcaaacttatgtcaagtaggggtt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
612257 |
aaaaataccaaactacccttcttattttccaacataaaaaatattctctctatctcaattatacagttctgtgctatcagacttatgtcaagtaggggtt |
612158 |
T |
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| Q |
106 |
ggtacatgttcgtgttttcatggctcccaatttgttcaaacataaccaacgttgatatgcatatagcagctattcttcccaacatgtaccaaacacagca |
205 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
612157 |
ggtacatgttcgagttttcatggcttccaatttgttcaaacataaccaacgttgatatgcatatagcagctattcttcccaacatgtaccaaacacaaca |
612058 |
T |
|
| Q |
206 |
tttattatg |
214 |
Q |
| |
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||||||||| |
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|
| T |
612057 |
tttattatg |
612049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 206 - 394
Target Start/End: Complemental strand, 611863 - 611675
Alignment:
| Q |
206 |
tttattatgtcataaacttatgatggtgtttaggtgtaatttgcaaaacacgcttttggtctgatattttgttgttcacaacattcctttcatcattttg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
611863 |
tttattatgtcataaacttatgatggtgtttaggtgtaatttgcaaaacacccttttggtctgatattttgttgttcacaatattcctttcatcattttg |
611764 |
T |
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| Q |
306 |
gatagaaataaatggccacttaccctttttgtcaaaagctatgggctgaataatttttctttcctttcacgcttttgaatagaattatc |
394 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
611763 |
gatagaaataaatggccacttaccttttttgtcaaaagctatgggctgaataatttttctttcctttcacgcttttgaatagaattatc |
611675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 39772055 - 39772105
Alignment:
| Q |
8 |
aaaaataccaaactacccttcttattttccaacataaaaaatattctctct |
58 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
39772055 |
aaaaataccaaaataccctttttattttccaacataaaatatattctctct |
39772105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 29615191 - 29615234
Alignment:
| Q |
8 |
aaaaataccaaactacccttcttattttccaacataaaaaatat |
51 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
29615191 |
aaaaataccaaaatattcttcttattttccaacataaaaaatat |
29615234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 39717419 - 39717380
Alignment:
| Q |
8 |
aaaaataccaaactacccttcttattttccaacataaaaa |
47 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
39717419 |
aaaaataccaaaataccctttttattttccaacataaaaa |
39717380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 50691085 - 50691035
Alignment:
| Q |
8 |
aaaaataccaaactacccttcttattttccaacataaaaaatattctctct |
58 |
Q |
| |
|
||||||| |||| ||||||| ||||| |||||||||||||||||| ||||| |
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| T |
50691085 |
aaaaatatcaaaataccctttttattatccaacataaaaaatattatctct |
50691035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 10089158 - 10089187
Alignment:
| Q |
29 |
ttattttccaacataaaaaatattctctct |
58 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10089158 |
ttattttccaacataaaaaatattctctct |
10089187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 14292451 - 14292495
Alignment:
| Q |
8 |
aaaaataccaaactacccttcttattttccaacataaaaaatatt |
52 |
Q |
| |
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|||| ||||||| |||| || |||||||||||||||||||||||| |
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| T |
14292451 |
aaaagtaccaaaataccatttttattttccaacataaaaaatatt |
14292495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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