View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_high_18 (Length: 252)
Name: NF6298_high_18
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 1481589 - 1481808
Alignment:
| Q |
20 |
aggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgcaaccctctttgcatgc |
119 |
Q |
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| T |
1481589 |
aggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgcaaccctctttgcatgc |
1481688 |
T |
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| Q |
120 |
tgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttatactcgatagca |
219 |
Q |
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| T |
1481689 |
tgccatgtttatggctacattttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttatactcgatagca |
1481788 |
T |
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| Q |
220 |
tacaaggcgttttcacaggt |
239 |
Q |
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|||||||||||||||||||| |
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| T |
1481789 |
tacaaggcgttttcacaggt |
1481808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 49190919 - 49191138
Alignment:
| Q |
20 |
aggagctggtaatccatttgaagcacgtgttgccgtgttagttgctatgtcacttgcactcactgaaacaagtatagtgagcgcaaccctctttgcatgc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49190919 |
aggagctggtaatccatttgaagcacgtgttgccgtgttagctgctatgtcacttggactcactgaagcaagtatagtgagcgcaaccctctttgcatgc |
49191018 |
T |
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| Q |
120 |
tgccatgtttatggctacagtttcagtagtgatacggaggttgttaaatacgttactgtcttggctcttctggtttctatatctgttatactcgatagca |
219 |
Q |
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|||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
49191019 |
cgccatgtttatggctacattttcagtagtgatacagaagttgttaaatacgtcactgtcttggctcctctggtttctatatccgttatactcgacagca |
49191118 |
T |
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| Q |
220 |
tacaaggcgttttcacaggt |
239 |
Q |
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||||||||||| || ||||| |
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| T |
49191119 |
tacaaggcgttctcgcaggt |
49191138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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