View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_high_20 (Length: 238)
Name: NF6298_high_20
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15369500 - 15369277
Alignment:
| Q |
1 |
tgataaccaactacaccacgaaaccctattgttaatttccgaacttaaaaagtaatataacttaaattttctacattaatattttgaaaacccgttataa |
100 |
Q |
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| T |
15369500 |
tgataaccaactacaccacgaaaccctgttgttaatcttcgaacttaaaaagtaatataactcaaattaactacatttatattttgaaaacccgttataa |
15369401 |
T |
|
| Q |
101 |
acattttccgtgtgtaaaa--gaattgaagttgaaatttcacactctcatcactttaactaacaatgctccgagcaactgcatttccggcaccgaacaat |
198 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15369400 |
acattttccgtgtgtaaaaaagaattgaagttgaaatttcacactctcatcactttaactaacaatgctccgagcaactgcatttccggcaccgaacaat |
15369301 |
T |
|
| Q |
199 |
tccacggtgattctctctcgaaat |
222 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
15369300 |
tccacggtgattctctctcgaaat |
15369277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29022887 - 29022855
Alignment:
| Q |
1 |
tgataaccaactacaccacgaaaccctattgtt |
33 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
29022887 |
tgataaccaactacaccacgaaaccttattgtt |
29022855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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