View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6298_high_6 (Length: 386)
Name: NF6298_high_6
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 368
Target Start/End: Original strand, 37234672 - 37234940
Alignment:
| Q |
100 |
atatcttttgtaataacgatcttatagaagaatcaatatctacaaagaaagttatcacttgtctgaaattatgctttatgcaactggtattgtcatgtag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37234672 |
atatcttttgtaataacgatcttatagaagaatcaatatctacaaagaaagttatcacttgtctcaaattatgctttatgcaactggtattgtcatgtag |
37234771 |
T |
|
| Q |
200 |
attccattttggtttatatgatattgaagtcaacgaatcacagctgcttaggcgtggttcataatttaaaattgaaactatggtgtttgttggaattatg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37234772 |
attccattttggtttatatgatattgaagtcaacgaatcacagctgcttaggcgtggttcataatttaaaattgaaactatggtgtttgttggaattatg |
37234871 |
T |
|
| Q |
300 |
agaggacacactgtgaagtggttgcacagctaccgacagggttgccattactgatgcaaaggattaaac |
368 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37234872 |
agaggacagactgtgaagtggttgcacagctaccgacagggttgccattactgatgcaaaggattaaac |
37234940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 37226269 - 37226410
Alignment:
| Q |
134 |
aatatctacaaagaaagttatcacttgtctgaaattatgctttatgcaactggtattgtcatgtagattccattttggtttatatgatattgaagtcaac |
233 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| ||| | |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37226269 |
aatatctacaaacaaagttatcacttgtctcaaatgatgttatatgtaactggtatagtcaagtagattccattttggtttatatgatattgaagtcaaa |
37226368 |
T |
|
| Q |
234 |
gaatcacagctgcttaggcgtggttcataatttaaaattgaa |
275 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
37226369 |
gaatcacagctgcttaggcgtggctcagaatttaaaattgaa |
37226410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 37266455 - 37266512
Alignment:
| Q |
43 |
gtaatttagccaaagatatactaatctctcgttgctaagcagatagccaaggaaggaa |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37266455 |
gtaattttaccaaagatatactaatctctcgttgctaagcagatagccaaggaaggaa |
37266512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 37260022 - 37260079
Alignment:
| Q |
43 |
gtaatttagccaaagatatactaatctctcgttgctaagcagatagccaaggaaggaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37260022 |
gtaattttaccaaagatatactaatctctcgttgctaagcagataaccaaggaaggaa |
37260079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University