View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_low_10 (Length: 358)
Name: NF6298_low_10
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 26238906 - 26239191
Alignment:
| Q |
11 |
cataggtgtttatttatttaatttttgtccgtagataagatgataaatatcaattaaaaatcacatacacttgtaaaattttgagtttaaactatgatga |
110 |
Q |
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| T |
26238906 |
cataggtgtttatttatttaatttttgtccgtagataagatgataaatatcaattaaaaatcacatacacttgtaaaattttgagtttaaactatgatga |
26239005 |
T |
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| Q |
111 |
aaatgttcaacttaataataatatttgcattccttacaaaaatttgatatatgtattgttagttgagtggaagtttacattacacaaaaaactataggag |
210 |
Q |
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| T |
26239006 |
aaatgatcaacttaat---aatatttgcattccttacaaaaatttgatatatgtattgttagttgagtggaagtttacattacacaaaaaactataggag |
26239102 |
T |
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| Q |
211 |
aaataaatcgtggccttagaaaacaattttaatttaaaactatttcatctttatagttttatacatttcttattcttgtgtatgagtaa |
299 |
Q |
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| T |
26239103 |
aaataaatcgtggccttagaaaacaattttaatttaaaactatttcatctttatagttttatacatttcttattcttgtgtatgagtaa |
26239191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 26239250 - 26239297
Alignment:
| Q |
297 |
taaatgttgtgttattgttgacgttggcaaatgggttgttatattttt |
344 |
Q |
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| T |
26239250 |
taaatattgtgttattgttgacgttggcaaatgggttgttatattttt |
26239297 |
T |
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