View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_low_14 (Length: 283)
Name: NF6298_low_14
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 29963403 - 29963658
Alignment:
| Q |
18 |
ataacattctcatcaaaccttcttgaagaaaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctcttccattaacaa |
117 |
Q |
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| T |
29963403 |
ataacattctcatcaaaccttcttgaagaaaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctcttccattaacaa |
29963502 |
T |
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| Q |
118 |
atgctctaattctcctcaatgcaatctcaactgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccgaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963503 |
atgctctaattctcctcaatgcaatctcaactgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccgaacc |
29963602 |
T |
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| Q |
218 |
cggcgaaacattgagctttacttcattgataatcaaacgccatagtttcatctcac |
273 |
Q |
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| T |
29963603 |
cggcgaaacattaagctttacttcattgataatcaaacgccaaagtttcatttcac |
29963658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 250
Target Start/End: Complemental strand, 10969710 - 10969574
Alignment:
| Q |
114 |
acaaatgctctaattctcctcaatgcaatctcaactgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaattaaaagccg |
213 |
Q |
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||||||||||| || || ||||||||| || || ||||||| ||| || |||||||||||||| ||| |||||||| ||||||||||||||||| | |
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| T |
10969710 |
acaaatgctcttatcctttgcaatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaag |
10969611 |
T |
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| Q |
214 |
aacccggcgaaacattgagctttacttcattgataat |
250 |
Q |
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| T |
10969610 |
accccggtgacacattaagcttcacctcattaataat |
10969574 |
T |
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