View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_low_17 (Length: 272)
Name: NF6298_low_17
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 6650090 - 6650335
Alignment:
| Q |
10 |
tcatcatcaaattcaccgtgtgcagcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaa |
109 |
Q |
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| T |
6650090 |
tcatcatcaaattcaccgtgtgcggcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaa |
6650189 |
T |
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| Q |
110 |
gatttgcatatgtacacaaagtttttggagctagtaacgtggcaaagctgttgaacgagcttaacgcgacgcagcgtgatgacgcggttaagtcgttggc |
209 |
Q |
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| T |
6650190 |
gatttgcatatgtacacaaagtttttggagctagtaacgtggcaaagctgttaaacgagcttaacgcgacgcagcgtgatgacgcggttaagtcgttggc |
6650289 |
T |
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| Q |
210 |
ttatgaggccgaggcgcggctgagggatccagtttatggtggtgtt |
255 |
Q |
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| T |
6650290 |
ttatgaggccgaggcgcggctgagggatccagtttatggttgtgtt |
6650335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 33246550 - 33246320
Alignment:
| Q |
25 |
ccgtgtgcagcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaagatttgcatatgtac |
124 |
Q |
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| T |
33246550 |
ccgtgtgcagcgtgcaagattcagcgtcgaaaatgcactaaggaatgcatttttgcaccctattttccgccggaaaatcctcaaaagtttacctacgtcc |
33246451 |
T |
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| Q |
125 |
acaaagtttttggagctagtaacgtggcaaagctgttgaacgagcttaacgcgacgcagcgtgatgacgcggttaagtcgttggcttatgaggccgaggc |
224 |
Q |
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| T |
33246450 |
acaaagtcttcggtgctagcaacgtggcaaagttactcaacgaggttgatgcttctcaacgtgaagatgctgttaagtctttagcttatgaagcagaagc |
33246351 |
T |
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| Q |
225 |
gcggctgagggatccagtttatggtggtgtt |
255 |
Q |
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| T |
33246350 |
gcgtttgagagatcctgtttatggttgtgtt |
33246320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 19281991 - 19282058
Alignment:
| Q |
13 |
tcatcaaattcaccgtgtgcagcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgc |
80 |
Q |
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| T |
19281991 |
tcatcaaattcaccatgtgcagcatgcaagtttctcagacgaaagtgcactcaagaatgtgattttgc |
19282058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 15262578 - 15262707
Alignment:
| Q |
11 |
catcatcaaattcaccgtgtgcagcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgcaccgtattttccaccggacaatcctcaaag |
110 |
Q |
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|||| ||||||||||| |||||||| || |||||||| || ||||||||| | ||| |||| |||||||| ||||||||||| || | || |||| |
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| T |
15262578 |
catcctcaaattcaccatgtgcagcatgcaagtttctacgccgaaaatgccaaccagaatgtgcatttgcaccttattttccacctgatcagccacaaaa |
15262677 |
T |
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| Q |
111 |
atttgcatatgtacacaaagtttttggagc |
140 |
Q |
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| T |
15262678 |
atttgcaaatgttcatagaatttttggagc |
15262707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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