View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6298_low_2 (Length: 605)

Name: NF6298_low_2
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6298_low_2
NF6298_low_2
[»] chr6 (11 HSPs)
chr6 (209-605)||(9833265-9833661)
chr6 (19-119)||(9832953-9833051)
chr6 (112-209)||(9833082-9833180)
chr6 (137-181)||(2455838-2455882)
chr6 (114-181)||(2460124-2460193)
chr6 (136-181)||(27909635-27909680)
chr6 (142-179)||(31583709-31583746)
chr6 (137-181)||(8420195-8420239)
chr6 (114-183)||(9027604-9027675)
chr6 (137-181)||(9667983-9668027)
chr6 (137-181)||(34939772-34939816)
[»] chr7 (2 HSPs)
chr7 (407-605)||(33468924-33469122)
chr7 (137-188)||(27626121-27626172)
[»] chr4 (7 HSPs)
chr4 (137-181)||(6987739-6987783)
chr4 (114-184)||(27725239-27725311)
chr4 (137-181)||(11264329-11264373)
chr4 (137-181)||(24929521-24929565)
chr4 (148-195)||(28406926-28406973)
chr4 (114-181)||(27123325-27123394)
chr4 (136-185)||(43412385-43412434)
[»] chr1 (6 HSPs)
chr1 (137-181)||(35017604-35017648)
chr1 (142-181)||(43333709-43333748)
chr1 (142-188)||(30259489-30259535)
chr1 (143-176)||(35669005-35669038)
chr1 (138-179)||(39347966-39348007)
chr1 (142-174)||(17420238-17420270)
[»] chr5 (5 HSPs)
chr5 (143-177)||(42582528-42582562)
chr5 (137-196)||(18875374-18875433)
chr5 (137-181)||(19138715-19138759)
chr5 (137-185)||(35963265-35963313)
chr5 (137-181)||(41052896-41052940)
[»] chr8 (2 HSPs)
chr8 (138-181)||(6875266-6875309)
chr8 (157-186)||(7039833-7039862)
[»] chr3 (5 HSPs)
chr3 (142-181)||(43397855-43397894)
chr3 (114-177)||(37273166-37273231)
chr3 (142-179)||(29771868-29771905)
chr3 (137-182)||(49465934-49465979)
chr3 (137-181)||(43115084-43115128)
[»] chr2 (6 HSPs)
chr2 (112-188)||(1742003-1742081)
chr2 (137-181)||(1939330-1939374)
chr2 (137-181)||(16947054-16947098)
chr2 (137-181)||(17017719-17017763)
chr2 (137-181)||(34652034-34652078)
chr2 (137-181)||(43065448-43065492)


Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 209 - 605
Target Start/End: Original strand, 9833265 - 9833661
Alignment:
Q  209 aattaagttgtttatccatgttactttcctaaatcgcttatttttattaactcagggaagttgtggctgatcttaaggcagccggggcttcatggattca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833265 aattaagttgtttatccatgttactttcctaaatcgcttatttttattaactcagggaagttgtggctgatcttaaggcagccggggcttcatggattca 9833364  T
Q  309 atttgatgaaccttcacttgtcttagaccttgaatcacccaagttgaacgcatttactgcagcatactcagatcttgcttcctctttatctggtttaaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833365 atttgatgaaccttcacttgtcttagaccttgaatcacccaagttgaacgcatttactgcagcatactcagatcttgcttcctctttatctggtttaaat 9833464  T
Q  409 gttcttgttgagacctactttgccgacattcccgctgaggcatacaagatcctcacaggtcttgctggtgtcacagcattcggagtcgatttagtccgtg 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9833465 gttcttgttgagacctactttgccgacattcccgctgaggcatacaagatcctcacaggtcttgctggtgtcacagcattcggattcgatttagtccgtg 9833564  T
Q  509 gagctaagactgttgatttgagtaagggtggattccctagtggaaaatacttgttcgctggagtagttgatggaaggaacatttgggctaatgatct 605  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833565 gagctaagactgttgatttgattaaggggggattccctagtggaaaatacttgttcgctggagtagttgatggaaggaacatttgggctaatgatct 9833661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 9832953 - 9833051
Alignment:
Q  19 caaaagtcattgcagtatacaagtaagaatctaagttgtggagaacggttaatagtttgcgctttatgtgtttataggcctatttggatgtcttatttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  9832953 caaaagtcattgcagtatacaagtaagaatctaagttgtggagaacggttaatagtttgcgcttta--tgtttataggcctatttggatgtcttatttga 9833050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 9833082 - 9833180
Alignment:
Q  112 tatttgagagatcttatggaaaaa-atatggcatgtccataaattattttcaacttatttccataagctcttcatgatttcttattgcttataagaaaa 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9833082 tatttgagagatcttatggaaaaacatatggcatgtccataaattattttcaacttatttccataagctcttcatgatagcttattgcttataagaaaa 9833180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 2455882 - 2455838
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||| ||||||| |||||||||||||||||||||||||||    
T  2455882 tatgacatgcccataaactattttcaacttatttccataagctct 2455838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 2460124 - 2460193
Alignment:
Q  114 tttgagagatcttatggaaaaaa--tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    ||||||||| |||||||||| ||  |||| ||||||  ||| || |||||||||||||||||||||||||    
T  2460124 tttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctct 2460193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 27909635 - 27909680
Alignment:
Q  136 atatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    ||||| ||||||||||| || |||||| ||||||||||||||||||    
T  27909635 atatgacatgtccataagttgttttcagcttatttccataagctct 27909680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 31583746 - 31583709
Alignment:
Q  142 catgtccataaattattttcaacttatttccataagct 179  Q
    ||||||||||| || |||||||||||||||||||||||    
T  31583746 catgtccataagttgttttcaacttatttccataagct 31583709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 8420195 - 8420239
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||| ||  |||||||||||||||||||||||||||    
T  8420195 tatgacatgtccacaagctattttcaacttatttccataagctct 8420239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 9027675 - 9027604
Alignment:
Q  114 tttgagagatcttatggaaaaaa--tatggcatgtccataaattattttcaacttatttccataagctcttc 183  Q
    ||||| ||| |||||||||| ||  |||| ||||||||||| || |||||| ||||||| ||||||||||||    
T  9027675 tttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagctcttc 9027604  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 9667983 - 9668027
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||  | |||||||||||||||||||||||||    
T  9667983 tatgacatgtccataagctgttttcaacttatttccataagctct 9668027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 34939816 - 34939772
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||    
T  34939816 tatgacatgtccataaattgttttcagcttatttccataaactct 34939772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 407 - 605
Target Start/End: Complemental strand, 33469122 - 33468924
Alignment:
Q  407 atgttcttgttgagacctactttgccgacattcccgctgaggcatacaagatcctcacaggtcttgctggtgtcacagcattcggagtcgatttagtccg 506  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||  | |   ||||||| | || |  ||| | |||||||||||    
T  33469122 atgttcttgttgagacctactttgctgatattcccgctgaggcatacaagaccctcacatctttgagtggtgtcgccgcttatggatttgatttagtccg 33469023  T
Q  507 tggagctaagactgttgatttgagtaagggtggattccctagtggaaaatacttgttcgctggagtagttgatggaaggaacatttgggctaatgatct 605  Q
    |||| | |||||| ||||| |||  |||| ||| || || ||||||||||   | || |||||||| ||||||||||||||||| ||||| ||||||||    
T  33469022 tggaaccaagactcttgatctgatcaaggctggttttcccagtggaaaatggatctttgctggagtcgttgatggaaggaacatctgggcaaatgatct 33468924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 27626121 - 27626172
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctcttcatgat 188  Q
    |||| |||||||||||| | |||| |||||||||||||||||||||||||||    
T  27626121 tatgacatgtccataaactgttttaaacttatttccataagctcttcatgat 27626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 6987739 - 6987783
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  6987739 tatgacatgtccataaactattttcaacttatttccataagctct 6987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 27725311 - 27725239
Alignment:
Q  114 tttgagagatcttatggaaaaaa--tatggcatgtccataaattattttcaacttatttccataagctcttca 184  Q
    ||||||||| |||||||||| ||  |||| |||||||||||| ||||||||| | |||||||||||| |||||    
T  27725311 tttgagagagcttatggaaataacttatgacatgtccataaactattttcaaatgatttccataagcacttca 27725239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 11264373 - 11264329
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||| | |||||||||||||||||||||||||    
T  11264373 tatgacatgtccataaactgttttcaacttatttccataagctct 11264329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 24929565 - 24929521
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||    
T  24929565 tatggcatgttcataaattgttttcagcttatttccataagctct 24929521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 28406973 - 28406926
Alignment:
Q  148 cataaattattttcaacttatttccataagctcttcatgatttcttat 195  Q
    |||||| ||||| || |||||||||||||||||||| |||||||||||    
T  28406973 cataaactatttgcagcttatttccataagctcttcctgatttcttat 28406926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 27123325 - 27123394
Alignment:
Q  114 tttgagagatcttatggaaaaaa--tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    ||||||||| |||||||||| ||  |||| ||||||  ||| || |||||||||||||||||||||||||    
T  27123325 tttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctct 27123394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 43412434 - 43412385
Alignment:
Q  136 atatggcatgtccataaattattttcaacttatttccataagctcttcat 185  Q
    ||||| |||||||||||||| ||| || ||||||| ||||||||||||||    
T  43412434 atatgacatgtccataaattgtttccatcttatttgcataagctcttcat 43412385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 35017648 - 35017604
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||    
T  35017648 tatgacatgtccataagttattttcaacttatttccataagctct 35017604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 43333748 - 43333709
Alignment:
Q  142 catgtccataaattattttcaacttatttccataagctct 181  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  43333748 catgtccataaattattttcatcttatttccataagctct 43333709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 30259489 - 30259535
Alignment:
Q  142 catgtccataaattattttcaacttatttccataagctcttcatgat 188  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  30259489 catgtcaataaattgttttcaacttatttccataagctctccatgat 30259535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 35669038 - 35669005
Alignment:
Q  143 atgtccataaattattttcaacttatttccataa 176  Q
    ||||||||||||| ||||||||||||||||||||    
T  35669038 atgtccataaattgttttcaacttatttccataa 35669005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 39347966 - 39348007
Alignment:
Q  138 atggcatgtccataaattattttcaacttatttccataagct 179  Q
    ||||||||||||||| || |||||| ||||||||||||||||    
T  39347966 atggcatgtccataagttgttttcagcttatttccataagct 39348007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 17420270 - 17420238
Alignment:
Q  142 catgtccataaattattttcaacttatttccat 174  Q
    |||||||||||||| ||||||||||||||||||    
T  17420270 catgtccataaattgttttcaacttatttccat 17420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 42582562 - 42582528
Alignment:
Q  143 atgtccataaattattttcaacttatttccataag 177  Q
    |||||||||||||||||||||||||||||||||||    
T  42582562 atgtccataaattattttcaacttatttccataag 42582528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 18875433 - 18875374
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctcttcatgatttcttatt 196  Q
    ||||||||| |||||| || |||||||||| |||||||||||||| || ||| |||||||    
T  18875433 tatggcatgcccataagttgttttcaacttgtttccataagctctccaggatatcttatt 18875374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 19138715 - 19138759
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| ||||| |||||||| |||||| ||||||||||||||||||    
T  19138715 tatgacatgtacataaattgttttcagcttatttccataagctct 19138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 35963313 - 35963265
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctcttcat 185  Q
    |||| ||||||||||| || |||||| |||||||||||||||| |||||    
T  35963313 tatgacatgtccataagttgttttcagcttatttccataagcttttcat 35963265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 41052940 - 41052896
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| ||||| |||||| |||||| ||||||||||||||||||||    
T  41052940 tatgacatgttcataaactatttttaacttatttccataagctct 41052896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 6875266 - 6875309
Alignment:
Q  138 atggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||    
T  6875266 atggcatgcccataaatttttttcaacttatttccttaagctct 6875309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 7039862 - 7039833
Alignment:
Q  157 ttttcaacttatttccataagctcttcatg 186  Q
    ||||||||||||||||||||||||||||||    
T  7039862 ttttcaacttatttccataagctcttcatg 7039833  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 43397894 - 43397855
Alignment:
Q  142 catgtccataaattattttcaacttatttccataagctct 181  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  43397894 catgtccataaattgttttcaacttacttccataagctct 43397855  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 37273231 - 37273166
Alignment:
Q  114 tttgagagatcttatggaaaaaa--tatggcatgtccataaattattttcaacttatttccataag 177  Q
    |||| |||| |||||||||| ||  |||| ||||||||||| || |||||||||||||||||||||    
T  37273231 tttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataag 37273166  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 29771905 - 29771868
Alignment:
Q  142 catgtccataaattattttcaacttatttccataagct 179  Q
    ||||||||||| || |||||||||||||||||||||||    
T  29771905 catgtccataagttgttttcaacttatttccataagct 29771868  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 49465934 - 49465979
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctctt 182  Q
    |||| ||||||||| || |||||||||||||||||||||| |||||    
T  49465934 tatgacatgtccatgaactattttcaacttatttccataaactctt 49465979  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 43115128 - 43115084
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| ||||||||||| || |||||| ||||||||||||||||||    
T  43115128 tatgacatgtccataacttgttttcagcttatttccataagctct 43115084  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 1742003 - 1742081
Alignment:
Q  112 tatttgagagatcttatggaaaaaa--tatggcatgtccataaattattttcaacttatttccataagctcttcatgat 188  Q
    |||||| |||| |||||||||| ||  |||| ||||| |||||  ||| |||||||||||||||||| |||||||||||    
T  1742003 tatttgggagagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgat 1742081  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 1939330 - 1939374
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||  | |||||||||||||||||||||||||    
T  1939330 tatgacatgtccataagctgttttcaacttatttccataagctct 1939374  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 16947098 - 16947054
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| ||||| |||||||||||||||||||||||| || ||||||    
T  16947098 tatgacatgttcataaattattttcaacttatttctatgagctct 16947054  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 17017763 - 17017719
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| ||||| |||||||||||||||||||||||| || ||||||    
T  17017763 tatgacatgttcataaattattttcaacttatttctatgagctct 17017719  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 34652034 - 34652078
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||  | |||||||||||||||||||||||||    
T  34652034 tatgacatgtccataagctgttttcaacttatttccataagctct 34652078  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 43065448 - 43065492
Alignment:
Q  137 tatggcatgtccataaattattttcaacttatttccataagctct 181  Q
    |||| |||||||||||||| |||||| |||||||| |||||||||    
T  43065448 tatgacatgtccataaattgttttcagcttatttcaataagctct 43065492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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