View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_low_20 (Length: 240)
Name: NF6298_low_20
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47871829 - 47871595
Alignment:
| Q |
1 |
aggacataattcaattagaagaatcatgattgagcaattgaaattgaagtgacgaataacactaaactatatgtgaagtactttttcccttttaactgtt |
100 |
Q |
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| T |
47871829 |
aggacataattcaattagaagaatcatgattgagcaattgaaattgaagtgacgaataacactaaactat--gtgaagtactttttcccttttaactgtt |
47871732 |
T |
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| Q |
101 |
gtgtagaattaaaactttataaaaagggttttctaagattttttggacgtttcaaacagtaactaataaggtgaacaaaggattttctatcattaagatg |
200 |
Q |
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| T |
47871731 |
gtgtagaattaaaactttatataaagggttttctaagattttttggacgtttcaaacagtaactaataaggtgaacaaaggattttctatcattaagatg |
47871632 |
T |
|
| Q |
201 |
tatattgtaatataatctctaaacagacaaccttctt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
47871631 |
tatattgtaatataatctctaaacagacaaccttctt |
47871595 |
T |
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