View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_low_22 (Length: 237)
Name: NF6298_low_22
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25091855 - 25091635
Alignment:
| Q |
1 |
cctcagtatctgatttccaccattcacctaaacaataacaaaataatgtgtgaattctaaaatatacttactttatttatatgatttcttgatcaaagag |
100 |
Q |
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| T |
25091855 |
cctcagtatctgatttccaccattcacctaaacaataacaaaataatgtgtgaattctaaaatatacttactttatttatatgatttcttgatcaaagag |
25091756 |
T |
|
| Q |
101 |
taatataacactgacctaatacaataacttgttccatatgtggtttgggaaaagggtaaggaactccaagcttaggtaaaatgactatggcaccatggac |
200 |
Q |
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| T |
25091755 |
taatataacaccgacctaatagaataacttgttccatatgtggtttgggaaaagggtaaggaactccaagcttaggtaaaatgactatggcaccatggac |
25091656 |
T |
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| Q |
201 |
agtagccctaagccaaaggac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
25091655 |
agtagccctaagccaaaggac |
25091635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 29552700 - 29552606
Alignment:
| Q |
124 |
ataacttgttccatatgtggtttgggaaaagggtaaggaactccaagcttaggtaaaatgactatggcaccatggacagtagccctaagccaaag |
218 |
Q |
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| T |
29552700 |
ataacttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaag |
29552606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29552857 - 29552823
Alignment:
| Q |
1 |
cctcagtatctgatttccaccattcacctaaacaa |
35 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29552857 |
cctcagtatctgatttccaccattcacctaaacaa |
29552823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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