View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6298_low_24 (Length: 228)

Name: NF6298_low_24
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6298_low_24
NF6298_low_24
[»] chr3 (4 HSPs)
chr3 (1-228)||(25092046-25092270)
chr3 (120-148)||(43921666-43921694)
chr3 (38-106)||(43921722-43921790)
chr3 (114-150)||(49861331-49861367)
[»] chr1 (5 HSPs)
chr1 (38-148)||(48632323-48632430)
chr1 (38-107)||(127939-128008)
chr1 (36-108)||(9148773-9148845)
chr1 (68-106)||(32741182-32741220)
chr1 (62-106)||(35678022-35678066)
[»] chr2 (5 HSPs)
chr2 (38-151)||(15989801-15989911)
chr2 (68-148)||(26576401-26576478)
chr2 (62-155)||(4747810-4747900)
chr2 (114-148)||(32200610-32200644)
chr2 (114-150)||(13039259-13039295)
[»] chr4 (7 HSPs)
chr4 (1-106)||(658251-658356)
chr4 (68-148)||(3420133-3420210)
chr4 (112-149)||(9120905-9120942)
chr4 (41-106)||(2641448-2641513)
chr4 (119-151)||(16410838-16410870)
chr4 (70-108)||(44508013-44508051)
chr4 (68-148)||(54305958-54306035)
[»] chr7 (5 HSPs)
chr7 (38-106)||(46014522-46014590)
chr7 (40-106)||(27616635-27616701)
chr7 (68-148)||(44572277-44572354)
chr7 (38-103)||(8799713-8799778)
chr7 (119-151)||(22291212-22291244)
[»] chr8 (2 HSPs)
chr8 (38-106)||(15850241-15850309)
chr8 (114-148)||(15131734-15131768)
[»] chr5 (1 HSPs)
chr5 (38-113)||(32676416-32676491)
[»] chr6 (3 HSPs)
chr6 (63-113)||(2602408-2602458)
chr6 (68-148)||(19294667-19294744)
chr6 (120-148)||(14494168-14494196)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25092270 - 25092046
Alignment:
Q  1 caccggtctaagagtgtcgaagtaaagnnnnnnnnctattttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtc 100  Q
    |||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25092270 caccggtctaagagtgtcgaagtaaagaaaaaaaattattttatttaggacaccagtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtc 25092171  T
Q  101 agacactgcgacaacacacctagtcctagaggtgtccgtgcttcatagattcttaccaactagcccaatcttagttggtaaagtgacaaataatttgaga 200  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25092170 agacactgcgaca---cacctagtcctagaggtgtccgtgcttcatagattcttaccaactagcccaatcttagttggtaaagtgacaaataatttgaga 25092074  T
Q  201 gaaacaaatattttaaccaagacataaa 228  Q
    ||||||||||||||||||||||||||||    
T  25092073 gaaacaaatattttaaccaagacataaa 25092046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 43921694 - 43921666
Alignment:
Q  120 ctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||||||||||||||||||||||    
T  43921694 ctagtcctagaggtgtccgtgcttcatag 43921666  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 43921790 - 43921722
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    ||||||| |||||||||| | || ||||||||||||||||   || |||||||||| |||||| |||||    
T  43921790 attttatctaggacaccgattttagttgtccgacacgtgtcagacaagtgtcataggagtgtcggacac 43921722  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 49861331 - 49861367
Alignment:
Q  114 acacacctagtcctagaggtgtccgtgcttcatagat 150  Q
    |||| |||||||||||||||||| |||||||||||||    
T  49861331 acacccctagtcctagaggtgtctgtgcttcatagat 49861367  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 48632430 - 48632323
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtcc 137  Q
    ||||||||||||||||||||||| |||||||||| |||||  |||||||||||| | |||||| ||||| |||   |||| |||||||||||||||||||    
T  48632430 attttatttaggacaccggtcttagttgtccgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcg---acacgcctagtcctagaggtgtcc 48632334  T
Q  138 gtgcttcatag 148  Q
    |||||||||||    
T  48632333 gtgcttcatag 48632323  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 127939 - 128008
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacact 107  Q
    |||||||||||||||||||||||  ||||||||||||||| |||  ||||| |||||| || ||||||||    
T  127939 attttatttaggacaccggtcttatttgtccgacacgtgtcgtaatagtgttatagaaatgccagacact 128008  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 9148845 - 9148773
Alignment:
Q  36 ctattttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactg 108  Q
    |||||||||||| ||||||| |||| |||||| |||||||||||| ||||| |||||| ||| || |||||||    
T  9148845 ctattttatttaagacaccgatctttgttgtctgacacgtgttgttcgagtttcataggagtatcggacactg 9148773  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 32741182 - 32741220
Alignment:
Q  68 cgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  32741182 cgacacgtgtcgtacgagtgtcataggagtgtcagacac 32741220  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 35678022 - 35678066
Alignment:
Q  62 gttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||    
T  35678022 gttgtccgacacgtgttgtacgagtgtgatactagtgtcggacac 35678066  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 15989911 - 15989801
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtcc 137  Q
    ||||||||||||||| ||||||| ||||||||||| |||| ||| ||||||||||| |||||  |||||||   ||||||  ||||||| |||||||| |    
T  15989911 attttatttaggacatcggtcttagttgtccgacatgtgtcgtaagagtgtcataggagtgttggacactg---caacacgtctagtccaagaggtgttc 15989815  T
Q  138 gtgcttcatagatt 151  Q
    ||||||||||||||    
T  15989814 gtgcttcatagatt 15989801  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 26576401 - 26576478
Alignment:
Q  68 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||| ||||| ||||||||| |||||| ||||| ||||||   |  |||||||||||||||||||||||||||||    
T  26576401 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgaca---cgtctagtcctagaggtgtccgtgcttcatag 26576478  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 4747900 - 4747810
Alignment:
Q  62 gttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatagattctta 155  Q
    |||||||||||| ||  |||| |||||||||| | |||| |||||  |||||   | |||||||||||||||||||||||||||||| ||||||    
T  4747900 gttgtccgacacatgccgtacaagtgtcataggattgtcggacaccacgaca---cgcctagtcctagaggtgtccgtgcttcataggttctta 4747810  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 32200644 - 32200610
Alignment:
Q  114 acacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||| ||||||||||||||||||||||||||||||    
T  32200644 acacgcctagtcctagaggtgtccgtgcttcatag 32200610  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 13039259 - 13039295
Alignment:
Q  114 acacacctagtcctagaggtgtccgtgcttcatagat 150  Q
    |||| |||||||||| |||||||||||||||||||||    
T  13039259 acacgcctagtcctataggtgtccgtgcttcatagat 13039295  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 658356 - 658251
Alignment:
Q  1 caccggtctaagagtgtcgaagtaaagnnnnnnnnctattttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtc 100  Q
    ||||| |||| ||||||||||||||||        | |||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||||||||    
T  658356 caccgttctaggagtgtcgaagtaaagaaaaaaaacaattttatttaggacactggtcttggttatccgacacgtgtcgtacaagtgtcatagaagtgtc 658257  T
Q  101 agacac 106  Q
     |||||    
T  658256 ggacac 658251  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 3420133 - 3420210
Alignment:
Q  68 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||| |||||| |||||||  |||||||||||| ||   ||||| ||||||| ||||||||||||||||||||||    
T  3420133 cgacacgtgtcgtacgattgtcataagagtgtcagacaccgc---aacacgcctagtcttagaggtgtccgtgcttcatag 3420210  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 9120942 - 9120905
Alignment:
Q  112 caacacacctagtcctagaggtgtccgtgcttcataga 149  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9120942 caacacacctagtcctagaggtgtccgtgcttcataga 9120905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 2641448 - 2641513
Alignment:
Q  41 ttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    |||||||||||||  ||||| ||||||| |||||||| ||||||||||||| | |||||| |||||    
T  2641448 ttatttaggacactagtcttagttgtccaacacgtgtcgtacgagtgtcattggagtgtccgacac 2641513  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 16410838 - 16410870
Alignment:
Q  119 cctagtcctagaggtgtccgtgcttcatagatt 151  Q
    |||||||||||||||||||||||||||||||||    
T  16410838 cctagtcctagaggtgtccgtgcttcatagatt 16410870  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 44508013 - 44508051
Alignment:
Q  70 acacgtgttgtacgagtgtcatagaagtgtcagacactg 108  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  44508013 acacgtgtcgtacgagtgtcataggagtgtcagacactg 44508051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 54305958 - 54306035
Alignment:
Q  68 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||| ||||| ||||||||| |||||| ||||| | ||||   | ||||||||||||||||||||| ||| ||||    
T  54305958 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgaca---cgcctagtcctagaggtgtccgtactttatag 54306035  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 46014522 - 46014590
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||| || |||||    
T  46014522 attttatttaggacaacggtcttggttgtccgacacatgtcgtacgagtgtcataggagtttcggacac 46014590  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 27616635 - 27616701
Alignment:
Q  40 tttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||  |||||| |||||    
T  27616635 tttatttaggacaccggtcttagttgtctgacacgtgtcgtacgagtgtcatatgagtgtcggacac 27616701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 44572354 - 44572277
Alignment:
Q  68 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||| ||||||||||||||| |||||| ||||| |||   |||| ||||||| ||||||||||||||||||||||    
T  44572354 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcg---acacgcctagtcgtagaggtgtccgtgcttcatag 44572277  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 8799713 - 8799778
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcaga 103  Q
    |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||  ||||||||    
T  8799713 attttatttaggacaccggtcttatttgtccgacacgtgatgtacaagtgtcataggcgtgtcaga 8799778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 22291212 - 22291244
Alignment:
Q  119 cctagtcctagaggtgtccgtgcttcatagatt 151  Q
    ||||||||||||||| |||||||||||||||||    
T  22291212 cctagtcctagaggtttccgtgcttcatagatt 22291244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 15850309 - 15850241
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacac 106  Q
    |||||||||||||||||| | || |||||| || |||||| ||||||||||||||| |||||| |||||    
T  15850309 attttatttaggacaccgattttagttgtctgatacgtgtcgtacgagtgtcataggagtgtcggacac 15850241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 15131768 - 15131734
Alignment:
Q  114 acacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||| ||||||||||||||||||||||||||||||    
T  15131768 acacgcctagtcctagaggtgtccgtgcttcatag 15131734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 32676491 - 32676416
Alignment:
Q  38 attttatttaggacaccggtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgaca 113  Q
    ||||||||||||||| ||||| | | ||||| |||||||| |||| |||||||||| |||||| ||||| ||||||    
T  32676491 attttatttaggacatcggtcatagctgtccaacacgtgtcgtacaagtgtcataggagtgtcggacacggcgaca 32676416  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 2602408 - 2602458
Alignment:
Q  63 ttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgaca 113  Q
    ||||||||||||||| ||| | ||||||||| |||||| ||||||||||||    
T  2602408 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgaca 2602458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 19294667 - 19294744
Alignment:
Q  68 cgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacaacacacctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||| ||||| |||||| || |||||| ||||| ||||||   | |||| ||||||||||||| |||||||||||    
T  19294667 cgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgaca---cgcctaatcctagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 14494196 - 14494168
Alignment:
Q  120 ctagtcctagaggtgtccgtgcttcatag 148  Q
    |||||||||||||||||||||||||||||    
T  14494196 ctagtcctagaggtgtccgtgcttcatag 14494168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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