View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6298_low_28 (Length: 218)
Name: NF6298_low_28
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_28 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0027 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 63059 - 63238
Alignment:
| Q |
20 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
63059 |
gaagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccgga |
63158 |
T |
|
| Q |
120 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63159 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatac |
63238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 21320740 - 21320561
Alignment:
| Q |
20 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgcataaatattataaaacgtttaatattcacatcagcattttgaaaatcaaaccgga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21320740 |
gaagccaaacatagacacaattttcattgaaaatcaaagttgtgcataaatattataaaacgttttatattcacatcagcattttgaaaatcaaaccgga |
21320641 |
T |
|
| Q |
120 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21320640 |
catcaaatcgacaaaactcctatcatggttcagctacttcaaagttcaaagcactaaaataactaaaccatggtttatac |
21320561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 44633722 - 44633767
Alignment:
| Q |
20 |
gaagccaaacatagacacaattttcattgaaaatcatagttgtgca |
65 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| |||| |||| |
|
|
| T |
44633722 |
gaagccaaacatcgacacaattttcattgcaaatcaaagttatgca |
44633767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University