View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6298_low_5 (Length: 412)
Name: NF6298_low_5
Description: NF6298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6298_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1481859 - 1482261
Alignment:
| Q |
1 |
atgactaaagataatctgttaaaattagttgaatattgtttaagatagttacaagttagttacattgtgatctaactaaactaactaatcttattcacaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1481859 |
atgactaaagataatctgttaaaattagttgaatattgtttaagatagttacaagttagttacattgtgatctaactaaactaactaatcgtattcacaa |
1481958 |
T |
|
| Q |
101 |
atctaaattctatcacaataagacaaacattgtctaaatttgttttacaagttagttacattatgaattaagttattgttgttaatattctgttgttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481959 |
atctaaattctatcacaataagacaaacattgtctaaatttgttttacaagttagttacattatgaattaagttattgttgttaatattctgttgttttg |
1482058 |
T |
|
| Q |
201 |
ttgatttgttatgtgatgatgagtgtttatattttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggtgattg |
300 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1482059 |
ttgatttgttatgtgatgatgagtgtttata-tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggcgattg |
1482157 |
T |
|
| Q |
301 |
agagaaggagggagagactgggaactgtggagattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctc |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1482158 |
agagaaggagggagagactgggaactgaggagattgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctc |
1482257 |
T |
|
| Q |
401 |
tgct |
404 |
Q |
| |
|
|||| |
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|
| T |
1482258 |
tgct |
1482261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 233 - 404
Target Start/End: Original strand, 36716878 - 36717049
Alignment:
| Q |
233 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggtgattgagagaaggagggagagactgggaactgtggag |
332 |
Q |
| |
|
|||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| |
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| T |
36716878 |
tttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaa |
36716977 |
T |
|
| Q |
333 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36716978 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
36717049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 34728641 - 34728685
Alignment:
| Q |
17 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
62 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
34728641 |
tgttagaattagttgaatattgtttaag-tagttacatgttagtta |
34728685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 34893626 - 34893594
Alignment:
| Q |
29 |
ttgaatattgtttaagatagttacaagttagtt |
61 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
34893626 |
ttgaatattgtttaagatagttacaagctagtt |
34893594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 49191237 - 49191288
Alignment:
| Q |
94 |
ttcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
49191237 |
ttcacaaatctaaattctatcacaataagacaaacattctctaagtttgttt |
49191288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 49191192 - 49191238
Alignment:
| Q |
4 |
actaaagataatctgttaaaattagttgaatattgtttaagatagtt |
50 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||||||||| |
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|
| T |
49191192 |
actaaagataatatgctagaattagttgaatattgtttaagatagtt |
49191238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 2622028 - 2622073
Alignment:
| Q |
17 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
62 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
2622028 |
tgttagaattagttgaatattgtttaaggtagttacgagttagtta |
2622073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 4573181 - 4573136
Alignment:
| Q |
17 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
62 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||| |||||||||| |
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|
| T |
4573181 |
tgttgaaattagtttagtattgtttaagatagttataagttagtta |
4573136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 37214237 - 37214282
Alignment:
| Q |
17 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
62 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||| |||||||||| |
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|
| T |
37214237 |
tgttagaattagttggatattgtttaaggtagttaaaagttagtta |
37214282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 41356623 - 41356668
Alignment:
| Q |
17 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
62 |
Q |
| |
|
||||| |||| ||||||||||||||||| | ||||||||||||||| |
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| T |
41356623 |
tgttagaattcgttgaatattgtttaagttcgttacaagttagtta |
41356668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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