View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6299_low_1 (Length: 454)
Name: NF6299_low_1
Description: NF6299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6299_low_1 |
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| [»] scaffold0603 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 5051440 - 5051012
Alignment:
| Q |
16 |
caatttgatgctcagcttctactttgcagcgtaacgcctcagtcttgatttcgtaaaacaaattatcaacttcaaagagagcatacctcagcgtatccga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5051440 |
caatttgatgctcagcttctactttgcagcgtaacgcctcagtcttgatttcgtaaaacaaattatcaacttcaaagagagcatacctcagcgtatccaa |
5051341 |
T |
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| Q |
116 |
ccaccattcatcgacatccgcaacagaagcataattaagtacatctaaaatcctcagcagttttttctcgagttttttcaagagtgaaaggtcaagctta |
215 |
Q |
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| T |
5051340 |
ccaccattcattgacatcagcaacagaagcataatgaagtacatctaaaatcctcagcagttttttctcgagttttttcaagagtgaaaggtcaagctta |
5051241 |
T |
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| Q |
216 |
gtggtccggaagttgtccatgaactcatgactagaaacaatcatatctagcgacaccttcacataagttgagagtgtttcgttcgtactagtggccattt |
315 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5051240 |
gtggtccggaagttgtccatgaacccatgattagaaacaattttgtctagcaacaccttcacatgagttgagagtgtttcgttcgtactagtggccattt |
5051141 |
T |
|
| Q |
316 |
gttgcttagtttgtaagaaatcacagcaaacaaaatgcaggattatgtatgtataagaaatatcttcaaaaggagtgtgtgaaagaaatctgatctagct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051140 |
gttgcttagtttgtaagaaatcacagcaaacaaaatgcaggattatgtatgtataagaaatatcttcaaaaggagtgtgtgaaagaaatctgatctagct |
5051041 |
T |
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| Q |
416 |
ttggttttagtaaagtcttcgtatctctg |
444 |
Q |
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| T |
5051040 |
ttggttttagtaaagtcttcgtatctctg |
5051012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 4080825 - 4080894
Alignment:
| Q |
30 |
gcttctactttgcagcgtaacgcctcagtcttgatttcgtaaaacaaattatcaacttcaaagagagcat |
99 |
Q |
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| T |
4080825 |
gcttccactttgcaccgcaatgcctcagtgttgatttcgtctaacaaattatcagcttcaaagacagcat |
4080894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 5863 - 5930
Alignment:
| Q |
33 |
tctactttgcagcgtaacgcctcagtcttgatttcgtaaaacaaattatcaacttcaaagagagcata |
100 |
Q |
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| T |
5863 |
tctactttgcagcgcaacgcttcagtcttgatttcaccaaacaaatcgtgaacttcaaagacagcata |
5930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 18387328 - 18387275
Alignment:
| Q |
60 |
ttgatttcgtaaaacaaattatcaacttcaaagagagcatacctcagcgtatcc |
113 |
Q |
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| T |
18387328 |
ttgattttgtcaaacaaattatcaacttcaaagacagcatatcccagcatatcc |
18387275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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