View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6301_high_1 (Length: 776)
Name: NF6301_high_1
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 105 - 760
Target Start/End: Original strand, 2555116 - 2555769
Alignment:
| Q |
105 |
ctacaactttttattgagccccaaattatcatttcgaaatgattgtgaatatcttgtgacataatttttctgttggtacttggtatagatgttgtttttc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2555116 |
ctacaactttttattgagccccaaattatcatttcgaaatgattgtgaatatcttgtgacataatttttctgttggtacttggtatagatgttgtttttc |
2555215 |
T |
|
| Q |
205 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2555216 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
2555315 |
T |
|
| Q |
305 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaattctatgataagatccggtaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2555316 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaattctatgataagatccggtaa |
2555415 |
T |
|
| Q |
405 |
gtaaagtttatatattatgatcattattttataagtgtcgtatagaaattgatatgaaaaatgtgaaaaagttaattnnnnnnnntaaattttgactaaa |
504 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
2555416 |
gtaaagtt--tatattatgatcattattttataagtgtcgtatagaaattgatatgaaaaacgtgaaaaagttaattaaaataaataaattttgactaaa |
2555513 |
T |
|
| Q |
505 |
catttttgtacaagtaaatgcaaaacactatttttatagctaaggactttatccttaaaatatttaacatttgtggaaatttaacttgagnnnnnnnctt |
604 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
2555514 |
catttttgtataagtaaatgcaaaacactatttttatagctaaggtctttatccttaaaatgtttaacatttgtggaaatttaacttgagtttttttctt |
2555613 |
T |
|
| Q |
605 |
ttaataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaata |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
2555614 |
ttaataaataggtgatgattgtattgcgcttaatagtggctccttttttattaatgttactcgggttacttgcggaccaggccatggaataaggttaata |
2555713 |
T |
|
| Q |
705 |
aaaattgcatctctaatgtacaatttcacacttatactatttctattgtagcttat |
760 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2555714 |
aaaattgcatctctaatgtacaatttcacacttatactatttctattgtagcttat |
2555769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 105 - 474
Target Start/End: Original strand, 2564797 - 2565152
Alignment:
| Q |
105 |
ctacaactttttattgagccccaaattatcatttcgaaatgattgtgaatatcttgtgacataatttttctgttggtacttggtatagatgttgtttttc |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
2564797 |
ctacaactttttattgagccctaaattatcatttcgaaatgattgtgaatatcttgtgacataatttttctgtcggtac-------agatgttgtttttc |
2564889 |
T |
|
| Q |
205 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
304 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
2564890 |
cattcctgcaatggtctcaatgttaggaacttgaggatcttgaatagcccaaaatctcatgtttctgttaatatgtgcaatcattcaacattttctcata |
2564989 |
T |
|
| Q |
305 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaattctatgataagatccggtaa |
404 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||| ||||||||||||||| |
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|
| T |
2564990 |
tatctattaattctgctgctgctagccccaacactgatggatttgacatttctcgttccaataatatctcgatagaaaattctaagataagatccggtaa |
2565089 |
T |
|
| Q |
405 |
gtaaagtttatatattatgatcattattttataagtgtcgtatagaaattgatatgaaaaatgtgaaaaa |
474 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
2565090 |
gtaaagtttatat--taagat---tattttagaagtgtc--atagaaattgatatgaaaaatgtggaaaa |
2565152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 502 - 754
Target Start/End: Original strand, 2565150 - 2565403
Alignment:
| Q |
502 |
aaacatttttgtacaagtaaatgcaaaacactatttttatagctaaggactttatccttaaaatatttaacatttgtggaaatttaacttgagnnnnnnn |
601 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
2565150 |
aaacatattagtataagtaaatgcaaaacactatttttatagctaaggtcattatccttaaaatatttaacatttgggaaaatttaacttgagttttttt |
2565249 |
T |
|
| Q |
602 |
cttt-taataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggtt |
700 |
Q |
| |
|
||| | |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
2565250 |
ttttcttttaaataggtgatgattgtattgcggttaacggtggctccttttttattaatattactcgggttacttgcggaccaggccatggaataaggtt |
2565349 |
T |
|
| Q |
701 |
aataaaaattgcatctctaatgtacaatttcacacttatactatttctattgta |
754 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
2565350 |
aataaaaatttcatctctaaagttcaatttcacacatatactatttctattgta |
2565403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 185 - 415
Target Start/End: Original strand, 2549696 - 2549926
Alignment:
| Q |
185 |
tggtatagatgttgtttttccattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaa |
284 |
Q |
| |
|
||||| |||||||| ||| ||||| || |||| |||||||||| |||| ||||||||| | ||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
2549696 |
tggtacagatgttgcattttcattcttgtaatgatctcaatgttcgaaatttgaggatcttaaatagcccaagatctcatgtttctgttaatatgtgcaa |
2549795 |
T |
|
| Q |
285 |
tcattcaacattttctcatatatctattaattctgctgctactagccccaacactgatgggtttgacatttctcgttccagtaatgtcttgatagaaaat |
384 |
Q |
| |
|
|||| |||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||| || |||| ||||| |||| |||||||| || || |
|
|
| T |
2549796 |
tcatgcaacattttcctatatatccattagttctcctgctactagccccaacactgatgggtttgatatatctcattccaataatatcttgatacaagat |
2549895 |
T |
|
| Q |
385 |
tctatgataagatccggtaagtaaagtttat |
415 |
Q |
| |
|
|| | |||| ||| ||||| | |||||||| |
|
|
| T |
2549896 |
tccaacataaaatctggtaattcaagtttat |
2549926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 205 - 354
Target Start/End: Original strand, 2531765 - 2531914
Alignment:
| Q |
205 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
304 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||| ||| ||||| ||| | || ||||| ||||||| |||||||||| | ||||||||||| ||| |
|
|
| T |
2531765 |
cattcatgcaagggtctcaatgttagtaatctgagtatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaata |
2531864 |
T |
|
| Q |
305 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatt |
354 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
2531865 |
tatctattaattcacctggtactagccccaatactgatgggtttgacatt |
2531914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 205 - 354
Target Start/End: Original strand, 2541308 - 2541457
Alignment:
| Q |
205 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
304 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||| ||| ||||| ||| | || ||||| ||||||| |||||||||| | ||||||||||| ||| |
|
|
| T |
2541308 |
cattcatgcaagggtctcaatgttagtaatctgagtatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaata |
2541407 |
T |
|
| Q |
305 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatt |
354 |
Q |
| |
|
||||||||||||| ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
2541408 |
tatctattaattcacctggtactagccccaatactgatgggtttgacatt |
2541457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 603 - 732
Target Start/End: Original strand, 2541788 - 2541916
Alignment:
| Q |
603 |
ttttaataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaa |
702 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||||| |||| | |||| ||| || ||||||| ||||| ||||||||||||||||| | |
|
|
| T |
2541788 |
ttttaataaacaggtgatgattgtattgccatcaatggtggctcctcttttgtcaatgctacaaggattacttgtggacctggccatggaataaggttta |
2541887 |
T |
|
| Q |
703 |
taaaaattgcatctctaatgtacaatttca |
732 |
Q |
| |
|
| ||||||| ||||||| || |||||||| |
|
|
| T |
2541888 |
t-aaaattgtgtctctaaagttcaatttca |
2541916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 1829894 - 1830004
Alignment:
| Q |
247 |
aatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcatatatctattaattctgctgctactagccccaacactgatgggt |
346 |
Q |
| |
|
|||||||| || |||||||| | ||| ||||||||||| | ||||||| |||||| |||| || ||||| |||||||||| |||||||||||||||| |
|
|
| T |
1829894 |
aatagcccgagttctcatgtatccattaatatgtgcaatcgtacaacattctctcatgtatccatcaattcacctgctactagtcccaacactgatgggt |
1829993 |
T |
|
| Q |
347 |
ttgacatttct |
357 |
Q |
| |
|
||||||||||| |
|
|
| T |
1829994 |
ttgacatttct |
1830004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 1864339 - 1864449
Alignment:
| Q |
247 |
aatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcatatatctattaattctgctgctactagccccaacactgatgggt |
346 |
Q |
| |
|
|||||||| || |||||||| | ||| ||||||||||| | ||||||| |||||| |||| || ||||| |||||||||| |||||||||||||||| |
|
|
| T |
1864339 |
aatagcccgagttctcatgtatccattaatatgtgcaatcgtacaacattctctcatgtatccatcaattcacctgctactagtcccaacactgatgggt |
1864438 |
T |
|
| Q |
347 |
ttgacatttct |
357 |
Q |
| |
|
||||||||||| |
|
|
| T |
1864439 |
ttgacatttct |
1864449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 609 - 706
Target Start/End: Original strand, 2550061 - 2550158
Alignment:
| Q |
609 |
taaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaa |
706 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||| |||||| |||| |||| | |||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
2550061 |
taaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
2550158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 711
Target Start/End: Original strand, 1830237 - 1830334
Alignment:
| Q |
614 |
aggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaaaattg |
711 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| |||||||| | ||||| || ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
1830237 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaaaattg |
1830334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 711
Target Start/End: Original strand, 1864682 - 1864779
Alignment:
| Q |
614 |
aggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggttaataaaaattg |
711 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||| |||||||| | ||||| || ||||| || ||||| |||||||| |||||||||| |
|
|
| T |
1864682 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaaaattg |
1864779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 701
Target Start/End: Original strand, 2525077 - 2525170
Alignment:
| Q |
608 |
ataaataggtgatgattgtattgcgcttaatggtggctccttttttattaatgttactagcgttacttgcggaccaggccatggaataaggtta |
701 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| || | || || |||||||| | ||| ||| ||||| |||||||||||||||||| |
|
|
| T |
2525077 |
ataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtta |
2525170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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