View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_high_10 (Length: 357)
Name: NF6301_high_10
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 28185299 - 28184966
Alignment:
| Q |
18 |
gaatgttgattctatgttcttgatgatgtttaagcttggtttatcaggtgaaagattgtgtaccaatgatgtttagtttcttggtnnnnnnnnnngaaa- |
116 |
Q |
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| T |
28185299 |
gaatgttgattctatgtacttgatgatgtttaagcttggtttatcaggtgaaagattgtgtaccaatgatgtttagtttcttggtaaaaaaaaacaaaac |
28185200 |
T |
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| Q |
117 |
---aggatttagctaattttataattgttaatttagctaattgtttaattggtaagtttgtgatgaaatcaacattgctgcaacacatttaacattttcg |
213 |
Q |
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| T |
28185199 |
aaaaggatttagctaattttataattgttaatttagctaattgtttaattggtaagtttgtgatgcaatcaacgttgctgcaacgcattcaaaatttacg |
28185100 |
T |
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| Q |
214 |
gaacaagtagagtaattttgagttatggataggaacaatgttttcattttcgg-ctatccatttccattttttggatgcagctgaacctcattcattagt |
312 |
Q |
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| T |
28185099 |
gaacaagcagagtaattttgagttatggataggaacaatgttttcattttcggcctatccatttccattttttggatgcggctgaatctcattcattagt |
28185000 |
T |
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| Q |
313 |
gttttt-gtggggtctttcgttagttttgttcct |
345 |
Q |
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| T |
28184999 |
ttttttaggggggtctttcgttagttttgttcct |
28184966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 24746419 - 24746474
Alignment:
| Q |
144 |
atttagctaattgtttaattggtaagtttgtgatgaaatcaacattgctgcaacac |
199 |
Q |
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| T |
24746419 |
atttagctaattttttaattgataagtttgcgatgaaattaacattgctgcaacac |
24746474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 24709325 - 24709386
Alignment:
| Q |
41 |
tgatgtttaagcttggtttatcaggtgaaagattgtgtaccaatgatgtttagtttcttggt |
102 |
Q |
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| T |
24709325 |
tgatgtttatgcttggttgagcagatgaaagattgtgttccaatgatttttaatttgttggt |
24709386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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