View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6301_high_14 (Length: 293)

Name: NF6301_high_14
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6301_high_14
NF6301_high_14
[»] chr3 (12 HSPs)
chr3 (4-216)||(30551934-30552146)
chr3 (184-271)||(959336-959423)
chr3 (184-271)||(39580382-39580469)
chr3 (186-271)||(39674648-39674733)
chr3 (184-271)||(25041826-25041913)
chr3 (184-258)||(42864754-42864828)
chr3 (184-271)||(41530195-41530282)
chr3 (197-271)||(21869343-21869417)
chr3 (201-258)||(27391130-27391187)
chr3 (184-258)||(29360229-29360302)
chr3 (214-258)||(22976274-22976318)
chr3 (184-254)||(51360636-51360706)
[»] chr7 (10 HSPs)
chr7 (184-271)||(26279447-26279534)
chr7 (184-258)||(22204838-22204912)
chr7 (184-258)||(22229827-22229901)
chr7 (184-271)||(25444096-25444183)
chr7 (184-271)||(30948048-30948135)
chr7 (184-271)||(19927757-19927843)
chr7 (184-258)||(45281303-45281377)
chr7 (184-271)||(40819433-40819519)
chr7 (186-271)||(15042763-15042848)
chr7 (202-271)||(22293350-22293419)
[»] chr2 (3 HSPs)
chr2 (184-271)||(14313887-14313974)
chr2 (184-271)||(14811765-14811852)
chr2 (186-258)||(13043342-13043410)
[»] chr8 (10 HSPs)
chr8 (140-271)||(44718075-44718206)
chr8 (184-271)||(10861309-10861396)
chr8 (184-271)||(17068664-17068751)
chr8 (184-271)||(17579522-17579609)
chr8 (184-271)||(17630662-17630749)
chr8 (184-271)||(20289828-20289915)
chr8 (184-271)||(21076458-21076545)
chr8 (184-271)||(34964248-34964335)
chr8 (184-258)||(29055054-29055128)
chr8 (184-247)||(3046295-3046358)
[»] chr5 (5 HSPs)
chr5 (184-258)||(6666185-6666259)
chr5 (184-271)||(36606630-36606717)
chr5 (184-271)||(8871733-8871820)
chr5 (184-271)||(13854195-13854282)
chr5 (184-258)||(32659410-32659484)
[»] scaffold0017 (1 HSPs)
scaffold0017 (184-271)||(37551-37638)
[»] chr4 (4 HSPs)
chr4 (184-271)||(54260604-54260691)
chr4 (184-271)||(26261669-26261756)
chr4 (186-245)||(32761020-32761079)
chr4 (56-114)||(26261347-26261405)
[»] chr6 (5 HSPs)
chr6 (140-271)||(1413902-1414032)
chr6 (184-258)||(21112585-21112659)
chr6 (184-271)||(8862520-8862607)
chr6 (184-241)||(9149737-9149794)
chr6 (188-247)||(34752388-34752447)
[»] chr1 (3 HSPs)
chr1 (186-257)||(22150199-22150270)
chr1 (184-258)||(3365949-3366023)
chr1 (187-255)||(23205703-23205771)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 30551934 - 30552146
Alignment:
Q  4 gagcaataaatattccctcttcaaatcattactaccgattaactcattcttagcatcaccggttgcctccatcaacacctcggatgtgttctactctgtt 103  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30551934 gagcaataaatattccctcttctaatcattactaccgataaactcaatcttaacatcaccggttgcctccatcaacacctcggatgtgttctactctgtt 30552033  T
Q  104 tctcttctctccattgatgttcttttatgatagtactactattgatgtttaactatattctaatttgtgcaggnnnnnnntgtaattgtcacttgttttg 203  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||| |||||||||    
T  30552034 tctcttctctccaatggtgttcttttatgatagtactactattgatgtttaactatattctaacttgtgcaggaaaaaaatgtaattgtcgcttgttttg 30552133  T
Q  204 atcatttttatta 216  Q
    |||||||||||||    
T  30552134 atcatttttatta 30552146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 959336 - 959423
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  959336 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 959423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 39580382 - 39580469
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  39580382 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 39580469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 39674648 - 39674733
Alignment:
Q  186 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  39674648 taattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 39674733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 25041826 - 25041913
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  25041826 tgtaattgtcacttgttttgatcattttcattaaggtgaatgtttgtttctcatcatttttagttatgtttatacattgtgcacttat 25041913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 42864754 - 42864828
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |  ||||||||||| ||||||||||    
T  42864754 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcttcatttttagttatgtttatac 42864828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 41530282 - 41530195
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    ||||||||||||||| |||||||||||| |||||| |||||||||| || ||||||||| |||| |||||||||| |||  |||||||    
T  41530282 tgtaattgtcacttgctttgatcattttcattaatgtgaatgtttgattattatcatttgtagttatgtttatacattgtgcacttat 41530195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 21869343 - 21869417
Alignment:
Q  197 tgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    ||||||||||||||| |||||| | ||||||||||| |||||||||||||| |||||||||| |||  |||||||    
T  21869343 tgttttgatcattttcattaatgtaaatgtttgtttattatcatttttagttatgtttatacattgtgcacttat 21869417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 27391187 - 27391130
Alignment:
Q  201 ttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||    
T  27391187 ttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatac 27391130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 29360229 - 29360302
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||  ||||||||||||| |||||| | ||||||||||| |||||| ||||||| ||||||||||    
T  29360229 tgtaattgtcactaattttgatcattttcattaatgtcaatgtttgtttattatca-ttttagttatgtttatac 29360302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 22976318 - 22976274
Alignment:
Q  214 ttaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  22976318 ttaatatgaatgtttgtttattatcatttttagttatgtttatac 22976274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 51360706 - 51360636
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgttt 254  Q
    |||||||||||||||  || |||||||| ||||   ||||||||||||| ||||||||||| || ||||||    
T  51360706 tgtaattgtcacttgactttatcattttcattagcgtgaatgtttgtttattatcattttttgttatgttt 51360636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 26279534 - 26279447
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||  |||||||    
T  26279534 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattgtgcacttat 26279447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 22204912 - 22204838
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||    
T  22204912 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatac 22204838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 22229827 - 22229901
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||    
T  22229827 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatac 22229901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 25444096 - 25444183
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  25444096 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtccacttat 25444183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 30948048 - 30948135
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  30948048 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 30948135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 19927843 - 19927757
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||| | |||||||||||| |||||||||| ||| ||||||||    
T  19927843 tgtaattgtcacttgttttgatcatttc-attaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtacacttat 19927757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 45281303 - 45281377
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||| | ||||||||||    
T  45281303 tgtaattgtcacttgttttgatcattttcattaatgtgaatgttagtttattatcatttttaattatgtttatac 45281377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 40819519 - 40819433
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  40819519 tgtaattgtcacttgttttgatcatttc-attaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 40819433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 15042848 - 15042763
Alignment:
Q  186 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    ||||| |||||||||||||||||||| ||| |  | ||||||||||| |||||||||||||| |||| ||||| |||  |||||||    
T  15042848 taattatcacttgttttgatcattttcatttacgtaaatgtttgtttattatcatttttagttatgtctatacattgtgcacttat 15042763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 22293350 - 22293419
Alignment:
Q  202 tgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||| |||||  ||||||||| ||| |||||||||||||| |||||||||| |||  |||||||    
T  22293350 tgatcattttcattaacttgaatgtttatttattatcatttttagttatgtttatacattgtgcacttat 22293419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 14313974 - 14313887
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||  |||||||    
T  14313974 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatacattgtgcacttat 14313887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 14811765 - 14811852
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  14811765 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 14811852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 13043410 - 13043342
Alignment:
Q  186 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||| ||||||     ||||||||| |||||||||||| | || |||||||    
T  13043410 taattgtcacttgttttgatcattttcattaat----gtgtttgtttattatcatttttaattatatttatac 13043342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 44718206 - 44718075
Alignment:
Q  140 tactattgatgtttaactatattctaatttgtgcaggnnnnnnntgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatca 239  Q
    ||||| |||| |||| ||||||| ||||||||||||        ||||||||||||||||| |||||||||||||| || | ||||||||||| ||||||    
T  44718206 tactaatgatatttagctatattttaatttgtgcagaaaaaatatgtaattgtcacttgttctgatcatttttatttatgtaaatgtttgtttattatca 44718107  T
Q  240 tttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||| |||||||||| ||| ||||||||    
T  44718106 tttttagttatgtttatacattgtacacttat 44718075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 10861396 - 10861309
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  10861396 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 10861309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 17068664 - 17068751
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  17068664 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 17068751  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 17579609 - 17579522
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  17579609 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 17579522  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 17630749 - 17630662
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  17630749 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 17630662  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 20289828 - 20289915
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  20289828 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 20289915  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 21076458 - 21076545
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  21076458 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 21076545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 34964335 - 34964248
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  34964335 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 34964248  T

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Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 29055054 - 29055128
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| ||||||||||    
T  29055054 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatac 29055128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 3046358 - 3046295
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagt 247  Q
    ||||||| |||||||||||||||||||| |||||| |||| |||| ||| ||||||||||||||    
T  3046358 tgtaattatcacttgttttgatcattttcattaatgtgaacgtttttttattatcatttttagt 3046295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 6666185 - 6666259
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||    
T  6666185 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttatac 6666259  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 36606630 - 36606717
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  36606630 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgggcacttat 36606717  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 8871733 - 8871820
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  8871733 tgtatttgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 8871820  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 13854282 - 13854195
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| || ||||||| |||  |||||||    
T  13854282 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatctttatacattgtgcacttat 13854195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 32659410 - 32659484
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||| ||||||| |||||||||||| |||| ||||||||  ||||||||||||| ||||||||||    
T  32659410 tgtaattgtcacttcttttgattatttttattaatgtgaaagtttgtttaatatcatttttagttatgtttatac 32659484  T

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Target: scaffold0017 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 37638 - 37551
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  37638 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 37551  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 54260604 - 54260691
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| |||||||||| |||  |||||||    
T  54260604 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatacattgtgcacttat 54260691  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 26261669 - 26261756
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||| |||||||||| |||  |||||||    
T  26261669 tgtaattgtcacttgttttgatcattttcatttatgtgaatgtttgtttattatcattttaagttatgtttatacattgtgcacttat 26261756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 32761020 - 32761079
Alignment:
Q  186 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcattttta 245  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  32761020 taattgtcgcttgttttgatcattttcattaatgtgaatgtttgtttattatcattttta 32761079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 26261347 - 26261405
Alignment:
Q  56 gcatcaccggttgcctccatcaacacctcggatgtgttctactctgtttctcttctctc 114  Q
    ||||||| | ||||||||||||||||||| | |||||||| |||| |||||||||||||    
T  26261347 gcatcactgattgcctccatcaacacctccggtgtgttctgctctctttctcttctctc 26261405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 1414032 - 1413902
Alignment:
Q  140 tactattgatgtttaactatattctaatttgtgcaggnnnnnnntgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatca 239  Q
    ||||| ||||||||| |||||||||||||||||  ||       ||||| |||||||||||||||||||||| |||| | ||||||||||||| ||||||    
T  1414032 tactaatgatgtttagctatattctaatttgtgt-ggaaaaatatgtaaatgtcacttgttttgatcattttcattagtgtgaatgtttgtttattatca 1413934  T
Q  240 tttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||| |||||||||| |||  |||||||    
T  1413933 tttttagttatgtttatacattgtgcacttat 1413902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 21112585 - 21112659
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| ||||||||||    
T  21112585 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatgtttatac 21112659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 8862520 - 8862607
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatacgttgcacacttat 271  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||| || ||||||| |||  |||||||    
T  8862520 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttgtttatcatcatttttagttatatttatacattgtgcacttat 8862607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 9149794 - 9149737
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatt 241  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||||    
T  9149794 tgtaattgtcacttgttttgatcattttcattaacctgaatgtttgtttattatcatt 9149737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 34752388 - 34752447
Alignment:
Q  188 attgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagt 247  Q
    |||||| ||| |||||||||||||||||||| | ||||||| ||| ||||||||||||||    
T  34752388 attgtctcttcttttgatcatttttattaatgttaatgtttatttattatcatttttagt 34752447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 22150270 - 22150199
Alignment:
Q  186 taattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttata 257  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||| |||||||||||||| |||||||||    
T  22150270 taattgtcacttgttttggtcattttcattaatgtgaatgtttgtttattatcatttttagttatgtttata 22150199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 3365949 - 3366023
Alignment:
Q  184 tgtaattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgtttatac 258  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||  ||||||||||    
T  3365949 tgtaattgtcacttgttttgatcattttcattaatgtgaatgtttatttattatcatttttagctatgtttatac 3366023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 23205771 - 23205703
Alignment:
Q  187 aattgtcacttgttttgatcatttttattaatatgaatgtttgtttgttatcatttttagtcatgttta 255  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||| | |||||||    
T  23205771 aattgtcacttgttttgatcattttcattaatgtgaatgttagtttattatcatttttaattatgttta 23205703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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