View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6301_high_15 (Length: 292)
Name: NF6301_high_15
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 49665555 - 49665809
Alignment:
| Q |
22 |
cacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
121 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49665555 |
cacagtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
49665654 |
T |
|
| Q |
122 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49665655 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
49665754 |
T |
|
| Q |
222 |
taactatacgtgtccgcattatgatctctactaccagcctcatagccatgatgat |
276 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49665755 |
taactatacgtgtccgcactatgatctctactaccagcctcatagccatgctgat |
49665809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 49709112 - 49709366
Alignment:
| Q |
22 |
cacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
121 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49709112 |
cacagtggcagtactacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
49709211 |
T |
|
| Q |
122 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49709212 |
ctcctcccacctatcactttgtttcttttcgtatcgttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgca |
49709311 |
T |
|
| Q |
222 |
taactatacgtgtccgcattatgatctctactaccagcctcatagccatgatgat |
276 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49709312 |
taactatacgtgtccgcactatgatctctactaccagcctcatagccatgctgat |
49709366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 49210252 - 49210458
Alignment:
| Q |
22 |
cacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagctttcagatataattatactc |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49210252 |
cacagtggtagtaatacttctacttgtgtttttagagacattaatctctacaaaatgctgcaaaacaaaagttgtgaagctttcagatatagttatactc |
49210351 |
T |
|
| Q |
122 |
ctcctcccacctatcactttgtttcttttcgtatcg-ttctctacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgc |
220 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | ||| | | ||| ||||| |||||||| ||| |||||| ||||||||||||||||||||| |
|
|
| T |
49210352 |
ttcctcccacctctcactttgtttcttttcaaatggaaactc-atataaccttgttc--gtgcaaccttactctccatgtcaaccctccaacatatatgc |
49210448 |
T |
|
| Q |
221 |
ataactatac |
230 |
Q |
| |
|
|||| ||||| |
|
|
| T |
49210449 |
ataattatac |
49210458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 49864575 - 49864522
Alignment:
| Q |
163 |
tacacaactctgttcatgtgcaaccgtaccctccatatcaaccctccaacatat |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
49864575 |
tacacaaccttgttcatgtgcaaccgtaccctccatgtcagccctccaacatat |
49864522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 41686396 - 41686248
Alignment:
| Q |
3 |
tgtaactcctcttgattttcacagtggtagtgatacttctacttgtgttttcagagacaataatctctacaaactgctgcaaaacaaaagttgtgaagct |
102 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || |||| ||| ||||||||| |||||||||||||||||||||||| | || || || ||||||| || |
|
|
| T |
41686396 |
tgtaagtcctcctgagtatcacagtggtaatgctactcctaattgtgtttttagagacaataatctctacaaactgttttaatccagaaattgtgaaact |
41686297 |
T |
|
| Q |
103 |
ttcagatataattatactcctcctcccacctatcactttgtttcttttc |
151 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
41686296 |
ttcagatataactatactcttccccccacctctcactttgtttcttttc |
41686248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 41686244 - 41686187
Alignment:
| Q |
173 |
tgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
230 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
41686244 |
tgttcatgtgcaaccgtactctccatatcaaacgtccaacatatatgcataattatac |
41686187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 18317611 - 18317668
Alignment:
| Q |
173 |
tgttcatgtgcaaccgtaccctccatatcaaccctccaacatatatgcataactatac |
230 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
18317611 |
tgttcatgtgcaacagtactctccatatcaaacttccaacatatatgcataattatac |
18317668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 18317550 - 18317607
Alignment:
| Q |
93 |
ttgtgaagctttcagatataattatactcctcctcccacctatcactttgtttcttttc |
151 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
18317550 |
ttgtgaagctttcaaatataactatactcttcc-cccacctctcactttgtttcttttc |
18317607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University