View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_high_16 (Length: 290)
Name: NF6301_high_16
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 45190707 - 45190978
Alignment:
| Q |
1 |
tgtgatatcattgttgttactagtagtgatgtatattaggtggttaaaaagacctttagattggaaagaaagtagaggtttctcttcatggctcttacct |
100 |
Q |
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| T |
45190707 |
tgtgatatcattgttgttactagtagtgatgtatattaggtggttaaaaagacctttagattggaaagaaagtagaggtttctcttcatggctcttacct |
45190806 |
T |
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| Q |
101 |
ctttgtccaaaatctnnnnnnngttgcagtgcaaacgcaaatgcatttgattcacctaagaataagcatggtggtcatgatgttcatcactctccaagag |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190807 |
ctttgtccaaaatctaaaaaaagttgcagtgcaaacgcaaatgcatttgattcacctaagaataagcatggtggtcatgatgttcatcactctccaagag |
45190906 |
T |
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| Q |
201 |
ggacaggaaggttctttcatttcatcgaattgcaacgagctacagataattttgatgaaaagagagtgattg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190907 |
ggacaggaaggttctttcatttcatcgaattgcaacgagctacagataattttgatgaaaagagagtgattg |
45190978 |
T |
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