View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_high_2 (Length: 678)
Name: NF6301_high_2
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 4775642 - 4774968
Alignment:
| Q |
1 |
atcttctaacaaaaccgtgatcctcggtacggcatcacttccttaaagacaggattggagttattgatgatacctccttcgtgagggggcgtgtaggagt |
100 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4775642 |
atcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattggagttattgatgatacctccttcttgagggggcgtgtaggagt |
4775543 |
T |
|
| Q |
101 |
attaacttaagcattgaccaaatcaaagaataatagttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaattagtatagttgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4775542 |
attaacttaagcattgaccaaatcaaagaataatggttgtaataatatctgtaaatggaaatcatatcccatagta---------------tagttgact |
4775458 |
T |
|
| Q |
201 |
gtttcatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaacatt---ttctattgacttgaatataacagaacgtat |
297 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4775457 |
gttccatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgttaacattattttctattgacttgaatataacagaacgtat |
4775358 |
T |
|
| Q |
298 |
---------acattgcaggtggctacagaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaa |
388 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775357 |
ttatcctatacatcgcaggtggctacagaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaa |
4775258 |
T |
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| Q |
389 |
aggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
4775257 |
aggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgctttacgtttgagtttgaatcatgttcctgc |
4775158 |
T |
|
| Q |
489 |
tcgagacaatttatataaaaggagggtcttggtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctgtaatcttgatgggttg |
588 |
Q |
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| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4775157 |
tagagacaatttatttaaaaggagggtcttagtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctctaatcttgatgggttg |
4775058 |
T |
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| Q |
589 |
gtttcgtacacctatgctgagacagttgatcctgatttgttaatatatcannnnnnnagccttttaagaaaatcagtcattgctaaatta |
678 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
4775057 |
gtttcgtacacctatgctgaaacagttgatcctgatttgttaatataccatttttttagccttttaagaaaatcagtcattgctaaatta |
4774968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 518
Target Start/End: Complemental strand, 29553195 - 29552984
Alignment:
| Q |
316 |
gaggatagatggatttggcatttacccacatctcatagttacatagttaacaatgcttgtaataaagtaacaaaggtgtttcagaactctactcctcat- |
414 |
Q |
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||||||||||||||||||||||||| | | ||||| ||||||| ||||| |||||| | ||||||| | | ||| || |||||||| |||||||| |
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| T |
29553195 |
gaggatagatggatttggcatttacactcttctcagagttacacagttagcaatgcgtataataaattgatggagggtttgcagaactccactcctcaga |
29553096 |
T |
|
| Q |
415 |
--------gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataa |
506 |
Q |
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||||||||||||||| | || | |||||||||||| ||||||||||| |||||| || |||||| | ||||| || | ||||||||| ||| |
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| T |
29553095 |
attctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaa |
29552996 |
T |
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| Q |
507 |
aaggagggtctt |
518 |
Q |
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|||||||||||| |
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| T |
29552995 |
aaggagggtctt |
29552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 43061000 - 43060836
Alignment:
| Q |
1 |
atcttctaacaaaaccgtgatcctcggtacggcatcacttccttaaagacaggattggagttattgatgatacctccttcgtgagggggcgtgtaggagt |
100 |
Q |
| |
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||||||| ||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||||||||| |
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| T |
43061000 |
atcttctcacaaagccgttatcctcggtacgacatcacttccttaaagacaagattggagttattgatgatacctccatcttgagcgggcgtgtaggagt |
43060901 |
T |
|
| Q |
101 |
attaacttaagcattgaccaaatcaaagaataatagttgtaataatatctgtaaatggaaatcat |
165 |
Q |
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||||||||||||||| ||||||||||| || ||| |||||||| ||||| ||||||||||||||| |
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| T |
43060900 |
attaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagtaaatggaaatcat |
43060836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 415 - 515
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
415 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
514 |
Q |
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||||||||||||||||| || | ||||||||| ||||| |||||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
|
| Q |
515 |
t |
515 |
Q |
| |
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| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 43060807 - 43060749
Alignment:
| Q |
234 |
tatatgtatatatggccacacaaatgttaacattttctattgacttgaatataacagaa |
292 |
Q |
| |
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||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
43060807 |
tatatatatatattaccacacaaatgttaatattttctattgacttgaatacaacagaa |
43060749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 92 - 260
Target Start/End: Complemental strand, 448677 - 448506
Alignment:
| Q |
92 |
tgtaggagtattaacttaa---gcattgaccaaatcaaagaataatagttgtaataatatctgtaaatggaaatcatatcccatagtaaatagccaatta |
188 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||| || | |||||||||||| |||||||||||||||||| ||||||| |||||||||| |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagtaaatggaaatcatatcttatagtaactagccaatta |
448578 |
T |
|
| Q |
189 |
gtatagttgactgtttcatgattttagcataattcatcattgtattatatgtatatatggccacacaaatgt |
260 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||||||| |
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| T |
448577 |
gtatagttgactgttccatgatttgagcaatattcatcattgtattccatgtatatatggctacacaaatgt |
448506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 515
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
415 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
514 |
Q |
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||||||||||||||||| || ||||||||| |||||||| ||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
|
| Q |
515 |
t |
515 |
Q |
| |
|
| |
|
|
| T |
38397807 |
t |
38397807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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