View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_high_24 (Length: 235)
Name: NF6301_high_24
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 42578177 - 42577971
Alignment:
| Q |
19 |
aaagtcgagttgatgaagaaaatctgcttatcctatcacattgtatattaagctcatctctttcctttctttatttctccctaatcttaatataattgga |
118 |
Q |
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| T |
42578177 |
aaagtcgagttgatgaagaaaatctgcttatcctatcacattgtatattaagctcatctctttcctttctttatttctccctaatcttaatataattgga |
42578078 |
T |
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| Q |
119 |
ctcaaacagaactatcaacttataagctggacccattatccttctaccaagtctctaagctccatctaaacaggcacattcttttcataacttagttctg |
218 |
Q |
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| T |
42578077 |
ctcaaacagaactatcaacttataagctggaccaattatccttctaacaagtctctaagctccaactaaacaggcacattcttttcataacttagtttag |
42577978 |
T |
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| Q |
219 |
tgctgct |
225 |
Q |
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||||||| |
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| T |
42577977 |
tgctgct |
42577971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 42570866 - 42570831
Alignment:
| Q |
109 |
tataattggactcaaacagaactatcaacttataag |
144 |
Q |
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| T |
42570866 |
tataattggactcaaacagaactatcaaattataag |
42570831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 42570809 - 42570773
Alignment:
| Q |
186 |
aaacaggcacattcttttcataacttagttctgtgct |
222 |
Q |
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| T |
42570809 |
aaacaggcacattcttttcagaacttagttttgtgct |
42570773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 42608517 - 42608469
Alignment:
| Q |
96 |
tccctaatcttaatataattggactcaaacagaactatcaacttataag |
144 |
Q |
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||||| |||||||||||| | || ||||||||||||||||| ||||||| |
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| T |
42608517 |
tccctcatcttaatataactagattcaaacagaactatcaagttataag |
42608469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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