View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_high_4 (Length: 517)
Name: NF6301_high_4
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 21 - 509
Target Start/End: Original strand, 22421542 - 22422030
Alignment:
| Q |
21 |
aaccatttagagagagtaagaagaactcacatgttgaaaaagtgtataataatcaccaaaataaataacacgcttcaaatccaaagcaataacagcattg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22421542 |
aaccatttagagagagtaagaagaactcacatgttgaaaaagtgtataataatcaccaaaataaataacacgcttcaaatccaaagcaataacagcattg |
22421641 |
T |
|
| Q |
121 |
aaaccttcaatcaaagccataagctccacaacaattttcctactttcattcccaacaacagccttagaaatttccaatatcaaattatcctcatcatcac |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22421642 |
aaaccttcaatcaaagccataagctccacagcaattttacgactctcattcccatcaacagtcttagaaatttccaatatcaaattatcctcatcatcac |
22421741 |
T |
|
| Q |
221 |
aaacagcaacaccaatcccagccaaagaaacattctcacctctcacaacctcctcactcactaaacccttaaaataaaccctaacaaccggactatcatc |
320 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22421742 |
aaacagcaacaccaatcccagccaaagaaacactctcacctctcacactctcctcactcactaaacccttaaaataaaccctaacaaccggaccttcatt |
22421841 |
T |
|
| Q |
321 |
gttccgactcgtcgaacccgacaaactcccttcaccaaacggtttctcaaaattatccccccatttatcccaatcctccaccggcatgttgaaaatctcc |
420 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
22421842 |
gttccgcatcgtcgaacccgaagaactcccttcaccaaacggtttctcgaaattatctccccattcatcccaatccttcaccggcatgttgaaaatctcc |
22421941 |
T |
|
| Q |
421 |
gacgccattttctgatcatgaatccgacggttgagatcatctctcgcttcacgcattgctttctcgctttgcagtctgtcgttcatctc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
22421942 |
gacgccattttctgatcatgaatccgacggttgagatcgtctctcgcttcacgcattgctctctcgctttgtaatctgtcgttcatctc |
22422030 |
T |
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