View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_high_5 (Length: 512)
Name: NF6301_high_5
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 142 - 495
Target Start/End: Complemental strand, 32885929 - 32885576
Alignment:
| Q |
142 |
atgtttagttgattaatacattttagactacttatccttaatttcatggatagttacaaaatttaaatactaaacaataaccaatggttggaacgcgaac |
241 |
Q |
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| T |
32885929 |
atgtttagttgattaatacattttagactacttatccttaatttcatggatagttacaaaatttaaatactaaacaataaccaatggttggaacatgaac |
32885830 |
T |
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| Q |
242 |
aaatagcactttttctgggagttctaattataaacaatatgcccagaagcaaacagaaaaatgtgatagcagaattatagaatgcatttcagatagagag |
341 |
Q |
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| T |
32885829 |
atatagcactttttctgggagttctaattataaacaatatgcccagaagcaaacagaaaaatgtgatagcagaattatagaatgcatttcagatagggag |
32885730 |
T |
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| Q |
342 |
taacagtcatccgtattttcgtagctttcttactaaccaagttctgaagacacagttttggcaaatgctaatggtagccacccaaacctgtattgagggt |
441 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32885729 |
taacagtcatccgtatttacgtagctttcttactaaccaagttctgaagacacagttttggcaaatgctaatggtagccacccaaacctgtattgagggt |
32885630 |
T |
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| Q |
442 |
atagctgcagccaaaggaaggaatcttaatataaagaaacaaaagcaactaaat |
495 |
Q |
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| T |
32885629 |
atagctgcagccaaaggaaggaatcttaatataaagaaacaaaagcaactaaat |
32885576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 32886027 - 32885913
Alignment:
| Q |
13 |
aaaatctgcaggaaagtagtcagggaatatatctcattcatgactaagtgtgccttaaaatgctaaaataactttttccaaagnnnnnnnntctgaatat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32886027 |
aaaatctgcaggaaagtagtcagggaatatatctcattcatgactaagtgtgccttaaaatgctaaaataactttttccaaagaaaaaaaatctgaatat |
32885928 |
T |
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| Q |
113 |
gtttagttgattaat |
127 |
Q |
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||||||||||||||| |
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| T |
32885927 |
gtttagttgattaat |
32885913 |
T |
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Back To:
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