View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_low_11 (Length: 339)
Name: NF6301_low_11
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 43216757 - 43217069
Alignment:
| Q |
11 |
acatcatcattgactttgaaataggttgagtgccatgacctaagacgttcaacagagacatcttccgtgccttgatgaccgttagattcagatcaaatag |
110 |
Q |
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| T |
43216757 |
acatcttcgttgactttgaaatagggtgagtgccatgacctaagacgttcaacagagacatcttccgtgccttgatgaccgttagattcagatcaaatag |
43216856 |
T |
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| Q |
111 |
ttcacaaaatatgcgaatggaagctgtattgattaagatttacgaaacaattctctatataaagcctttattagacagcaaatctttacttactttgttt |
210 |
Q |
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| T |
43216857 |
ttcacaaaatatgcgaatggaagctgtattgattaagatttaggaaacaattctctatataaagcctttattagacagcaaatctttacttactttgttt |
43216956 |
T |
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| Q |
211 |
ctgagataggcnnnnnnnncacttgcattcaactatctctgtttttgttgaattctccagattttctaatgggattcaaacactattcagataataacta |
310 |
Q |
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| T |
43216957 |
ctgagataggc-aaaaaaacacttgcattcaactatctctgtttttgttgaattctccagattttctaatgggattcaaacactattcagataataacta |
43217055 |
T |
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| Q |
311 |
tgacaggtttatac |
324 |
Q |
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| T |
43217056 |
tgacaggtttatac |
43217069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 43210727 - 43210792
Alignment:
| Q |
11 |
acatcatcattgactttgaaataggttgagtgccatgacctaagacgttcaacagagacatcttcc |
76 |
Q |
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| T |
43210727 |
acatcttcgttgactttgaaatagggtgagtgccatgacctaagacgttcaacagagacatcttcc |
43210792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 41658700 - 41658635
Alignment:
| Q |
11 |
acatcatcattgactttgaaataggttgagtgccatgacctaagacgttcaacagagacatcttcc |
76 |
Q |
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| T |
41658700 |
acatcttcgttgactttgaaatagggcgagtgccatgacctaagacgttcaacagagacatcttcc |
41658635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 43227025 - 43226976
Alignment:
| Q |
74 |
tccgtgccttgatgaccgttagattcagatcaaatagttcacaaaatatg |
123 |
Q |
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| T |
43227025 |
tccgtgccttgatgaccgttagattcagatcaaatagttcacaaaatatg |
43226976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 41651167 - 41651215
Alignment:
| Q |
75 |
ccgtgccttgatgaccgttagattcagatcaaatagttcacaaaatatg |
123 |
Q |
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| T |
41651167 |
ccgtgccttggtgactgttagattcagatcaaatagttcacaaaatatg |
41651215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 43202640 - 43202705
Alignment:
| Q |
11 |
acatcatcattgactttgaaataggttgagtgccatgacctaagacgttcaacagagacatcttcc |
76 |
Q |
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| T |
43202640 |
acatcttcgttgactttgaaatagggtgagtgtcccgacggaagacgttcaactgagacatcttcc |
43202705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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