View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6301_low_12 (Length: 334)
Name: NF6301_low_12
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 39120077 - 39119770
Alignment:
| Q |
19 |
aggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatctactatcactttctagatgatacgcagtggacaggcgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39120077 |
aggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatctactatcgctttctagatgatacgcagtggacaggcgta |
39119978 |
T |
|
| Q |
119 |
actttgtgccactaagacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagatacaagtctgcaactttgacagcagtgaaattg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39119977 |
actttgtgccactaagacgaaacagttaacgcccaaaatgactgagaaaaatcgggtcacgggcagatacaagtctgcaactttgacagcagtgaaattg |
39119878 |
T |
|
| Q |
219 |
gtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgattttgaaaagaagggagcccaccaccccaatcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39119877 |
gtcggcagcataccaaattgtgaagcctttgagagtcgaccgaccaccactaatatcactgtgttattttgaaaagaagggagcccaccaccccaatcat |
39119778 |
T |
|
| Q |
319 |
ttcatctc |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
39119777 |
ttcatctc |
39119770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 38611491 - 38611664
Alignment:
| Q |
19 |
aggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatcta-ctatcactttctagatgatacgcagtggacaggcgt |
117 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||| | |||||||| | ||||||| ||| ||| ||||||| |
|
|
| T |
38611491 |
aggcttgtcgtgcagaaaacaccgtaggtactgctgaagcgttttgttgacgatttctatctatccatcactttgtggatgatatgcaatggccaggcgt |
38611590 |
T |
|
| Q |
118 |
aactttgtgccactaagacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagatacaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38611591 |
aactttgtgccactaagacgaaacagttaacgccaaaaacgactgagaaaaatcgggtcacggtcagatacaag |
38611664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 39117645 - 39117515
Alignment:
| Q |
194 |
tgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgattttgaaaa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
39117645 |
tgcaactttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcactgtt--attttgaaaa |
39117548 |
T |
|
| Q |
294 |
gaagggagcccaccaccccaatcatttcatctc |
326 |
Q |
| |
|
|||||||||||||| || | |||||||||||| |
|
|
| T |
39117547 |
gaagggagcccaccccctcggtcatttcatctc |
39117515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 39117867 - 39117700
Alignment:
| Q |
19 |
aggcttgtcgtgcacaaaacatcgtaagtactgctgaagcgttttgttgatgatttctatcta-ctatcactttctagatgatacgcagtggacaggcgt |
117 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||| | |||||||| | |||||||||||||||||| |||| |
|
|
| T |
39117867 |
aggcttgtcgtgcacaaaacaccgtagctactgctgaaacgttttgttgacgatttctatctatccatcactttgtggatgatacgcagtggacaagcgt |
39117768 |
T |
|
| Q |
118 |
aactttgtgccactaagacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagat |
186 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||| ||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
39117767 |
aactttgtgccactaaaatgaaacagttcacgccaaaaacaactgag-aaaatcgggtcacggccagat |
39117700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 38612662 - 38612801
Alignment:
| Q |
187 |
acaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgatt |
286 |
Q |
| |
|
|||| ||||||||||||||| || |||||||| ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
38612662 |
acaactctgcaactttgacaacattgaaattgatcggcagtataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcacagtgtgatt |
38612761 |
T |
|
| Q |
287 |
ttgaaaagaagggagcccaccaccccaatcatttcatctc |
326 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
38612762 |
ttgaaaagaagggagcccaccccctcgatcatttcatctc |
38612801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 38612464 - 38612619
Alignment:
| Q |
34 |
aaaacatcgtaagtactgctgaagcgttttgttgatgatttctatcta-ctatcactttctagatgatacgcagtggacaggcgtaactttgtgccacta |
132 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||| |||||||| ||| | |||||||| | |||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
38612464 |
aaaacaccgtaggtactgctgaagtgttttgttgacgatttctacctatccatcactttgtggatgatacacagtagacaagcgtaactttgtgccacta |
38612563 |
T |
|
| Q |
133 |
agacgaaacagttaacgcccaaaacgactgagaaaaatcgggtcacgggcagataca |
189 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
38612564 |
agacgaaacagttcacgccaaaaacgactgag-aaaatcgggtcacggtaagataca |
38612619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University