View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_low_13 (Length: 324)
Name: NF6301_low_13
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 33905467 - 33905162
Alignment:
| Q |
1 |
tatcaccaaaaattaggtggtgcatgtattgatttatgccccttatatttattattaccataaagggctctaaaaaatctcctagacctgtttgttttca |
100 |
Q |
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| T |
33905467 |
tatcaccaaaaattaggtggtgcatgtattgatttatgccccttatatttattattaccataaagggctctaaaaaatctcctagacctgtttgttttca |
33905368 |
T |
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| Q |
101 |
acttcataaaaggaaccttacgtgaaacagcttgccaaatcatttgaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaacttc |
200 |
Q |
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| T |
33905367 |
acttcataaaaggaaccttacgtgaaacagcttgccaaatcatttcaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaacttc |
33905268 |
T |
|
| Q |
201 |
tttcaatctgttccacattcttgtccattcatctttgccaatactcctaatgaagtttatcagatacttctttttaacagcatcccttgtgcgaacaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905267 |
tttcaatctgttccacattcttgtccattcatctttgccaatactcctaatgaagtttatcagatacttctttttaacagcatcccttgtgcgaacaaat |
33905168 |
T |
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| Q |
301 |
acgcag |
306 |
Q |
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|||||| |
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| T |
33905167 |
acgcag |
33905162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 266
Target Start/End: Original strand, 9326228 - 9326397
Alignment:
| Q |
97 |
ttcaacttcataaaaggaaccttacgtgaaacagcttgccaaatcatttgaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaa |
196 |
Q |
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||||| |||||| ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || || | | |||||||||| | ||||| |
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| T |
9326228 |
ttcaatttcatagaaggaactttatgtgaaacagcttgccaaatcatttgtacagcatcaccttccttagatggaaaattatattcaaagaaatgttcaa |
9326327 |
T |
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| Q |
197 |
cttctttcaatctgttccacattcttgtccattcatctttgccaatactcctaatgaagtttatcagata |
266 |
Q |
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| T |
9326328 |
cctctttcaacttgttccacatttttgtccactcttctttgcctatactcctgatgaaatttagcagata |
9326397 |
T |
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