View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6301_low_23 (Length: 237)
Name: NF6301_low_23
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36100357 - 36100579
Alignment:
| Q |
1 |
ccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100357 |
ccaaaagctttagcaattataactccaaaagatgattctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtg |
36100456 |
T |
|
| Q |
101 |
gcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100457 |
gcggccacgattatgaaggcttctcatacttatcagacgtgccttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatga |
36100556 |
T |
|
| Q |
201 |
aacaacatgggttgaagctggtg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36100557 |
aacaacatgggttgaagctggtg |
36100579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 21482348 - 21482563
Alignment:
| Q |
1 |
ccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtg |
100 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||| ||||| | || | ||||||||||||| |
|
|
| T |
21482348 |
ccaaaacctttggcaattataactgcaaaagatgattctcatgtccaagcaacaattcaatgcctcaaaagtaacaaaattcagatcagaatccgaagtg |
21482447 |
T |
|
| Q |
101 |
gcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatga |
200 |
Q |
| |
|
|||||||||| | |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| || |
|
|
| T |
21482448 |
gcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttcatctcaattcagttgatgtcaatttacaagaaga |
21482547 |
T |
|
| Q |
201 |
aacaacatgggttgaa |
216 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
21482548 |
aacagcatgggttgaa |
21482563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 34972022 - 34971814
Alignment:
| Q |
8 |
ctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggcca |
107 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| | || ||||||| |||||||| || || |
|
|
| T |
34972022 |
ctttggcaattataactgcaaaagatgtttctcatgtccaagcaacaattaaatgtgccaaaagtaacaacattcagataagaattcgaagtggagggca |
34971923 |
T |
|
| Q |
108 |
cgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaaca |
207 |
Q |
| |
|
|| |||||||| || ||||| |||||||| ||| ||| | || || ||||| || ||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34971922 |
tgactatgaaggtttatcatatttatcagatgtgccttttattgtacttgacatgtttcacctcaattcagttgatgtcaatttacaagaatcaacaaca |
34971823 |
T |
|
| Q |
208 |
tgggttgaa |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
34971822 |
tgggttgaa |
34971814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36107616 - 36107831
Alignment:
| Q |
1 |
ccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtg |
100 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| ||| ||| ||||| |||||||||||||||||||| ||||||| | || | ||||| ||||||| |
|
|
| T |
36107616 |
ccaaaacctttggcaattataactgcaaaagatgattcgcatatccaagaaacaattaaatgtgccaaaagcaacaacattcagattagaattcgaagtg |
36107715 |
T |
|
| Q |
101 |
gcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatga |
200 |
Q |
| |
|
|||| ||||| |||||||| || ||||| ||||||| ||| ||| | ||||| ||||| || |||| |||||||||||||| ||||||||||||| |
|
|
| T |
36107716 |
gcggtcacgactatgaaggtttttcatatgtatcagatgtgccttttattatacttgacatgtttcatctcaattcagttgatatcaatttacaagaatc |
36107815 |
T |
|
| Q |
201 |
aacaacatgggttgaa |
216 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
36107816 |
aacagcatgggttgaa |
36107831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 36090717 - 36090504
Alignment:
| Q |
3 |
aaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggc |
102 |
Q |
| |
|
|||| |||| ||||||||||| ||| ||| |||| ||||||||| |||| |||||||||| |||| |||||| | || | ||||| ||||||||| |
|
|
| T |
36090717 |
aaaacctttggcaattataacagtaaaggatagttcccatgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcgaagtggc |
36090618 |
T |
|
| Q |
103 |
ggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaa |
202 |
Q |
| |
|
|| || ||||| ||||| || ||| | |||||||| || ||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| |||| |
|
|
| T |
36090617 |
ggacatgattacgaaggtttatcaaatgtatcagacatgccttatgttataattgacttgcttcatctcaattcaattgatgtcaatttagaagaagaaa |
36090518 |
T |
|
| Q |
203 |
caacatgggttgaa |
216 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
36090517 |
ctgcatgggttgaa |
36090504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8338241 - 8338463
Alignment:
| Q |
1 |
ccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtg |
100 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| | || ||||||| ||||||| |
|
|
| T |
8338241 |
ccaaaatctttggcaattataactgcaaaagatgcttctcatgtccaagcaacaattaaatgtgccaaaagcaacaatattcagataagaattcgaagtg |
8338340 |
T |
|
| Q |
101 |
gcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatga |
200 |
Q |
| |
|
|||||||||| || ||||||||||| ||| |||||||| | |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8338341 |
gcggccacgactacgaaggcttctcttacgtatcagacatatcttttgttataattgacctgcttcacctcaattcagttgatctcaatttacaagatga |
8338440 |
T |
|
| Q |
201 |
aacaacatgggttgaagctggtg |
223 |
Q |
| |
|
||| ||||||||||| |||||| |
|
|
| T |
8338441 |
aactgcatgggttgaatctggtg |
8338463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 6838384 - 6838592
Alignment:
| Q |
8 |
ctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggcca |
107 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||| ||||||| | || | ||||| |||||||| || || |
|
|
| T |
6838384 |
ctttggcaattataactgtaaaagatgattctcatgtccaagaaacagttaaatgtgccaaaagcaacaacattcagattagaattcgaagtggtggtca |
6838483 |
T |
|
| Q |
108 |
cgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaaca |
207 |
Q |
| |
|
||| |||||||| | ||||| ||||||| ||| ||| ||||||| ||||| || |||| |||||||| ||||| |||||||||||||| |||| || |
|
|
| T |
6838484 |
cgactatgaaggttgttcatatgtatcagatgtgccttttgttatacttgacatgtttcatctcaattctgttgatgtcaatttacaagaatcaacagca |
6838583 |
T |
|
| Q |
208 |
tgggttgaa |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
6838584 |
tgggttgaa |
6838592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University