View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_low_24 (Length: 236)
Name: NF6301_low_24
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 43227068 - 43227272
Alignment:
| Q |
15 |
caaaggggatcttgtcttatgatgatcattgcttacatcattagagaaacaaagaacaatcacatcaaagcaaaccttaacaaaatattcannnnnnnnn |
114 |
Q |
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| T |
43227068 |
caaaggggatcttgtcttatgatgatcattgcttacatcattagagaaacaaagaacaatcacatcaaagcaaaccttaacaaaatattcattttttatt |
43227167 |
T |
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| Q |
115 |
ggtgaatgtcaaacaataactctaaacccctttgtccttaataataattttaaaaggaacaggttgttcgagacgttcttcctcacgttgttcgcgacga |
214 |
Q |
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| T |
43227168 |
ggtgaatgtcaaacaataagtctaaacccctttgtccttaataataattttaaaaggaacaggttgttcgagacgttcttcttcgcgttgttcgcgacga |
43227267 |
T |
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| Q |
215 |
tggtc |
219 |
Q |
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||||| |
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| T |
43227268 |
tggtc |
43227272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 43236583 - 43236776
Alignment:
| Q |
20 |
gggatcttgtcttatgatgatcattgcttacatcattagagaaacaaagaacaatcacatcaaagcaaaccttaacaaaatattcannnnnnnnnggtga |
119 |
Q |
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|||||||||||||||||||||||| |||||||| || | |||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
43236583 |
gggatcttgtcttatgatgatcatggcttacattataaaagaaacaaagaacaattacatcaaagcaaaccttaacaaaatattc-tttttttcttgtga |
43236681 |
T |
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| Q |
120 |
atgtcaaacaataactctaaacccctttgtccttaataataattttaaaaggaacaggttgttcgagacgttcttcctcacgttgttcgcgacgat |
215 |
Q |
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| T |
43236682 |
atgac-aacaataagtctaaacccttttgtccttaataataattttaaaaggaacgggttgttcaagacgttcttcttcgcgttcttcgcggcgat |
43236776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 43244757 - 43244901
Alignment:
| Q |
15 |
caaaggggatcttgtcttatgatgatcattgcttacatcattagagaaacaaagaacaatcacatcaaagcaaaccttaacaaaatattcannnnnnnnn |
114 |
Q |
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|||| |||||||||||||| ||| || || |||||||||| | |||||| || |||||| |||||||||||||||||||| ||||||| |
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| T |
43244757 |
caaacgggatcttgtcttaggataattatagcttacatcagaaaagaaactaaaaacaattacatcaaagcaaaccttaac--aatattc---------- |
43244844 |
T |
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| Q |
115 |
ggtgaatgtcaaacaataactctaaacccctttgtccttaataataattttaaaaggaac |
174 |
Q |
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| T |
43244845 |
--taaatgtc-aacaataaatctaaaaccttttgtccttaataataattttaaaaggaac |
43244901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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