View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_low_27 (Length: 212)
Name: NF6301_low_27
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 4775882 - 4775705
Alignment:
| Q |
18 |
gtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacat |
117 |
Q |
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| T |
4775882 |
gtactatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacat |
4775783 |
T |
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| Q |
118 |
tggagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcattttcttcg |
198 |
Q |
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| T |
4775782 |
tggagctacatatctatgtgcaaaccctgtctttc---actctaggatgaagcatattgccatagattatcattttgttcg |
4775705 |
T |
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Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 43061241 - 43061071
Alignment:
| Q |
20 |
actatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattg |
119 |
Q |
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| T |
43061241 |
actatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacatta |
43061142 |
T |
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| Q |
120 |
gagctacatctctatgtgcaaaccctgtctttcagtactctaggatgaagcatattgccatagattatcatttt |
193 |
Q |
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| T |
43061141 |
gagctacatatctatgtgcaaaccctgtttttc---actataggatgaaacacattgccatagattatcatttt |
43061071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
113 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
153 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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