View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_low_3 (Length: 557)
Name: NF6301_low_3
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 31797844 - 31797622
Alignment:
| Q |
11 |
cacagagacaagtaatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagat |
110 |
Q |
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| T |
31797844 |
cacagagacaagtaatgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagat |
31797745 |
T |
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| Q |
111 |
tatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactatatcatccaa |
210 |
Q |
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| T |
31797744 |
tatacttgttgcacacaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttcatgaccataagtattcactaaatcatccaa |
31797645 |
T |
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| Q |
211 |
tatgtaaaattgagcttatgaaa |
233 |
Q |
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| T |
31797644 |
tatgtaaaattgagcttatgaaa |
31797622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 31787378 - 31787308
Alignment:
| Q |
42 |
aagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagatta |
112 |
Q |
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| T |
31787378 |
aagatcggacatttcaattatatgcacgaagatatgatttctcacaagaactttggagttgaaagagatta |
31787308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 31786930 - 31786851
Alignment:
| Q |
369 |
gagtctgccttgcaccgcactcatacctttaagcccattttgaaaaggtacattataaatttcgttcagctaatttcaaggaa |
451 |
Q |
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| T |
31786930 |
gagtttgccttgcactgcactcctacctttaagctcatcttgaaaaggtacat---aacttgggttcagctaatttcaaggaa |
31786851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 31787210 - 31787163
Alignment:
| Q |
184 |
accataagtattcactatatcatccaatatgtaaaattgagcttatga |
231 |
Q |
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|||||||||||||||||||||||| |||| |||||||| | ||||||| |
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| T |
31787210 |
accataagtattcactatatcatcaaataggtaaaatttatcttatga |
31787163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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