View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6301_low_6 (Length: 489)
Name: NF6301_low_6
Description: NF6301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6301_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 12404141 - 12403685
Alignment:
| Q |
13 |
aaaatgaccaaagaatatccatagatacctcgcggttatagacttgagcaggaaaccagaagcggccagtttcgatagcaagataccagttcataacaga |
112 |
Q |
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| T |
12404141 |
aaaatgaccaaagaatatccatagatacctcgcggttatagacttgagcaggaaaccagaagcggccagtttcaattgcaagataccagttcataacagc |
12404042 |
T |
|
| Q |
113 |
atcaacaggcaatgaactcctatgattgcagctatcatttccatcaccaacctttaatttcatcccttgaaaaggccaaagaagagagaaaattttcatc |
212 |
Q |
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| T |
12404041 |
ttcaacaggcaatgaactcctatgattgcagctatcatttccatcaccaacctttaatttcatcccttgaaaaggccaaagaagagagaaaattttcatc |
12403942 |
T |
|
| Q |
213 |
cataacccactttgtttgccatatttaagactcccaacacccctatttgaagcaacatgccatttccattccctataagcagcttgaccaataactccac |
312 |
Q |
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| T |
12403941 |
cataacccactttgtttgccatgtttaagactcccaacacccatatttgaagcaacatgccatttccattccctataagcagcttgaccaataactccac |
12403842 |
T |
|
| Q |
313 |
cccatttcttcttcatgtgtctctcccaaaagtaatcactcacacatctctctctcaatgaatggcaaacaccagccatttgacaaagtgaagaaggagg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
12403841 |
cccatttcttcttcatgtgtctctcccaaaagtaatcactcacacatctctccctcaatgaatggcaaataccagccatttggcaaagggaagaaggagg |
12403742 |
T |
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| Q |
413 |
taaattttcaagtatgcattccaaggtaagctctggcaagtccaacaatgataactt |
469 |
Q |
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| T |
12403741 |
taatttttcaagtatgcattccaagataagctctggcaagtccaacaatgataactt |
12403685 |
T |
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Back To:
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Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 263 - 459
Target Start/End: Original strand, 38728887 - 38729083
Alignment:
| Q |
263 |
agcaacatgccatttccattccctataagcagcttgaccaataactccaccccatttcttcttcatgtgtctctcccaaaagtaatcactcacacatctc |
362 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
38728887 |
agcaacatgccatttccattccctataagcaacagaaccaataactctaccccatttctgtttcatgtgtctctcccaaaggtgatcactcacacatctc |
38728986 |
T |
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| Q |
363 |
tctctcaatgaatggcaaacaccagccatttgacaaagtgaagaaggaggtaaattttcaagtatgcattccaaggtaagctctggcaagtccaaca |
459 |
Q |
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|| ||||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| ||||||||||| |||||| ||||| ||||||| |
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| T |
38728987 |
tccctcaacgaatgacaaacaccggccatttgacaaagtgaggatggaggtagcttttcaagaatgcattccaacacaagctcaggcaaatccaaca |
38729083 |
T |
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