View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_high_12 (Length: 268)
Name: NF6302_high_12
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_high_12 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 16381303 - 16381555
Alignment:
| Q |
1 |
caaagaagcaagtaatatttagtatgagtaacacaaccattggtgccatgagcaattttgcaccgtcgaaattaaacctaccctgctcatatttcttttg |
100 |
Q |
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| T |
16381303 |
caaagaagcaagtaatatttagtatgagtaacacaaccattggtgccatgagcaattttgcaccgtcgaaattaaacctaccctgctcatatttcttttg |
16381402 |
T |
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| Q |
101 |
cgtatctttgtcaattgctttgtctgataaagtgaattttaccttgttcaacccaaaccannnnnnngttgcttctataattgcaaaaacgcacccaatt |
200 |
Q |
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| T |
16381403 |
cgtatctttgtcaattgctttgtctgataaagtgaattttaccttgttcaacccaaaccatttttttgttgcttctataattgcaaaaacgcacccaatt |
16381502 |
T |
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| Q |
201 |
gatgttacaatcgcatttctttgttcattccaccaatgtgtcgaggagccacc |
253 |
Q |
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| T |
16381503 |
gatgttagaatcgcatttctttgttcattccaccaatgtgtcgaggagccacc |
16381555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 18236 - 18001
Alignment:
| Q |
1 |
caaagaagcaagtaatatttagtatgagtaacacaaccattggtgccatgagcaattttgcaccgtcgaaattaaacctaccctgctcatatttcttttg |
100 |
Q |
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| T |
18236 |
caaagaagcaaacaatatttattgtgagtaacacaataactggtgccataagcaatgctgcaccatcaaaattaaacttaccctgctcatatttctttag |
18137 |
T |
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| Q |
101 |
cgtatctttgtcaattgctttgtctgataaagtgaattttaccttgttcaacccaaaccannnnnnngttgcttctataattgcaaaaacgcacccaatt |
200 |
Q |
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| T |
18136 |
cttatctttgtcaattgctttgtctgataaagtgaagtttgccttgttcaacccaaacttttttttcgttgtttctataattgcgaaaacgcacccaatt |
18037 |
T |
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| Q |
201 |
gatgttacaatcgcatttctttgttcattccaccaa |
236 |
Q |
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| T |
18036 |
gattttacaatcccacttctttgttcattccaccaa |
18001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 17577893 - 17578145
Alignment:
| Q |
1 |
caaagaagcaagtaatatttagtatgagtaacacaaccattggtgccatgagcaattttgcaccgtcgaaattaaacctaccctgctcatatttcttttg |
100 |
Q |
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||||||||||| ||| |||| |||||| ||||||| || ||||||||| | ||| ||||||| || |||||||| |||| |||||||||| |||| |
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| T |
17577893 |
caaagaagcaaacaatgtttattatgagcaacacaatcaatggtgccatcaacaacgttgcaccttcaaaattaaatttaccttgctcatattgctttac |
17577992 |
T |
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| Q |
101 |
cgtatctttgtcaattgctttgtctgataaagtgaattttaccttgttcaacccaaaccannnnnnngttgcttctataattgcaaaaacgcacccaatt |
200 |
Q |
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| T |
17577993 |
cttatctttgtcaactgctttgtttgataaagtgaattttcccttattcaacccaaaccatttttttgttgcttctataattgcaaaaaaacatccaatt |
17578092 |
T |
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| Q |
201 |
gatgttacaatcgcatttctttgttcattccaccaatgtgtcgaggagccacc |
253 |
Q |
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| T |
17578093 |
gattttacaatccaacttctttgttcatcccaccaaattctagaggagccacc |
17578145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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