View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_high_19 (Length: 251)
Name: NF6302_high_19
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_high_19 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 51852696 - 51852454
Alignment:
| Q |
9 |
agcaaagggcagtgcttctgagaactcaaggctagtgatgataatcttactaagttgtggcctcaacaccttgtgtctctgtccttcttttgtttgttct |
108 |
Q |
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| T |
51852696 |
agcaaagggtagtgcttctgagaactcaaggctagtgatgataatcttactaagttgtggcctcaacaccttgtgtctctgtccttcttttgtttgttct |
51852597 |
T |
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| Q |
109 |
cggaaatgctctttggatttgcttccaactggggaacaacaatcacttttaacacgtgatagcaagattctactttcttcttcaagcttgtaagagtttc |
208 |
Q |
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| T |
51852596 |
cgggaatgctctttggatttgcttccaactggggaacaacaatcacttttaacacgtgatagcaagattctactttcttcttcaagcttgtaagagtttg |
51852497 |
T |
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| Q |
209 |
gagttctgggggttttgggggttctgggtgttcgatttcgacc |
251 |
Q |
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| T |
51852496 |
gagttctgggggttttgggggttctgggtgttcgacttcgacc |
51852454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 51822787 - 51822598
Alignment:
| Q |
9 |
agcaaagggcagtgcttctgagaactcaaggctagtgatgataatcttactaagttgtggcctcaacaccttgt---gtctctgtccttcttttgtttgt |
105 |
Q |
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| T |
51822787 |
agcaaagggcagtgcttctgagaactcaaggctagtgatgataattttactaagttgtggcctcaaaaccttcttctgtcgttgtccttcttttatttgt |
51822688 |
T |
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| Q |
106 |
tctcggaaatgctctttggatttgcttccaactggggaacaacaatcacttttaacacgtgatagcaagattctactttcttcttcaagc |
195 |
Q |
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| T |
51822687 |
tctcgggagtgctctttagatttacttccaactggggaacaacaatcacttttaatacttgataatgagagtcttgtttcttcttcaagc |
51822598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 51862805 - 51862660
Alignment:
| Q |
91 |
ccttcttttgtttgttctcggaaatgctctttggatttgcttccaactggggaacaacaatcacttttaacacgtgatagcaagattctactttcttctt |
190 |
Q |
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| T |
51862805 |
ccttcttttgttagttcccgggagtgctctttggatttggttccgaccggggaataataatcacttttaatacttgacaatgagattctcgtgtcttcat |
51862706 |
T |
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| Q |
191 |
caagcttgtaagagtttcgagttctgggggttttgggggttctggg |
236 |
Q |
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| T |
51862705 |
caatcttgaaaaagttgggcgttctgggagttttgggggttatggg |
51862660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 51862902 - 51862864
Alignment:
| Q |
9 |
agcaaagggcagtgcttctgagaactcaaggctagtgat |
47 |
Q |
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| T |
51862902 |
agcaaaaggtagtgcttctgagaactcaaggctagtgat |
51862864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 2833134 - 2833171
Alignment:
| Q |
88 |
tgtccttcttttgtttgttctcggaaatgctctttgga |
125 |
Q |
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| T |
2833134 |
tgtccttcttttgtttgttctcgggaatgatctttgga |
2833171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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