View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6302_high_2 (Length: 459)
Name: NF6302_high_2
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6302_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 35234664 - 35234236
Alignment:
| Q |
18 |
tatatttgagtgaagactcgttttattctttgaaaaatatttgaagtccagtttagttccataggaaaataagaatatattttaatatatataatccttg |
117 |
Q |
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| T |
35234664 |
tatatttgagtgaagactcgttttattctttgaaaaatatttgaagtccagtttagttccataggaaaataagaatatattttaacata----atccttg |
35234569 |
T |
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| Q |
118 |
aaaaattaaaccgatacagcctaatctcttccttcttttacacagtaattggttgatgaaggcaaggtaaagaaataaaatatagttcccttatacagat |
217 |
Q |
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| T |
35234568 |
aaaaattaaaccgatacagcctaatctcttccttcttttacacagtaattggttgatgaaggcaaggtaaggaaataaaatatagttcccttatacagat |
35234469 |
T |
|
| Q |
218 |
atatagtatagtaacagaaccatgtatgtacttgcaaattcataagcaacttttgtttacttccaaagaaattctgtgaaatattggaggcgaattaggg |
317 |
Q |
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| T |
35234468 |
atatagtatagtaacagaaccatgtatgtacttgcaaattcataagcaacttttgcttacttccaaagaaattctgtgaaatattggaggcgaattaggg |
35234369 |
T |
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| Q |
318 |
cattttataagttatcgcatgacataggatagtgtggcttgatttatgaaggnnnnnnnnccctgtggccctaattgcatagacggtttcatttgactaa |
417 |
Q |
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| T |
35234368 |
cattttataagttatcgcatgacataggatagtgtggcttgatttatgaaggaaaaaaaaacctgtggccctaattgcatagacggtttcatttgactaa |
35234269 |
T |
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| Q |
418 |
tttatatatgactaataattgacgtagtataat |
450 |
Q |
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| T |
35234268 |
tttatatatgactaataattgacgtagtataat |
35234236 |
T |
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