View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6302_high_20 (Length: 247)

Name: NF6302_high_20
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6302_high_20
NF6302_high_20
[»] chr3 (3 HSPs)
chr3 (1-145)||(16652747-16652891)
chr3 (1-145)||(7604743-7604887)
chr3 (30-145)||(19011671-19011786)
[»] chr2 (1 HSPs)
chr2 (1-145)||(27313617-27313761)
[»] chr7 (2 HSPs)
chr7 (1-147)||(24773397-24773542)
chr7 (1-145)||(35350088-35350233)
[»] chr5 (4 HSPs)
chr5 (1-146)||(33826378-33826522)
chr5 (1-146)||(39878946-39879092)
chr5 (3-150)||(2416271-2416419)
chr5 (1-145)||(39348656-39348803)
[»] chr8 (3 HSPs)
chr8 (1-147)||(27018742-27018889)
chr8 (3-145)||(9061886-9062028)
chr8 (107-153)||(42758484-42758530)
[»] chr1 (5 HSPs)
chr1 (3-145)||(38443780-38443923)
chr1 (1-146)||(4014499-4014645)
chr1 (3-74)||(15197684-15197755)
chr1 (1-62)||(25880894-25880957)
chr1 (84-147)||(25882691-25882754)
[»] chr6 (4 HSPs)
chr6 (1-145)||(921110-921255)
chr6 (1-145)||(2277165-2277312)
chr6 (177-216)||(26455404-26455443)
chr6 (145-174)||(26455459-26455488)
[»] scaffold0531 (1 HSPs)
scaffold0531 (1-145)||(10948-11095)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 16652747 - 16652891
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||    
T  16652747 tgtcatttcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcattttttttaaattgttaacgaatgtt 16652846  T
Q  101 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  16652847 tttcatctcataaaacccgtgcggcgcacgggttagtaatatagt 16652891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 7604887 - 7604743
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||    
T  7604887 tgtcatttcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcattttttttaaattgttaacgaatgtt 7604788  T
Q  101 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  7604787 tttcatctcataaaattcgtgcggcgcacgggttagtaatctagt 7604743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 19011671 - 19011786
Alignment:
Q  30 gagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtttttcatctcataaaacccgtgcggcgcac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||    
T  19011671 gagatctataataatgagagacaatattatataatgtaatgttcattttttttaaattgttaacgaatgtttttcatctcataaaacccgtgcggcgcac 19011770  T
Q  130 gggttagtaatctagt 145  Q
    ||||||||||| ||||    
T  19011771 gggttagtaatatagt 19011786  T

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Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27313761 - 27313617
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtt 100  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||    
T  27313761 tgtcatttcatcatcttattctattcacggagatctataataatgagagacaatattatataatgtaatgttcattttttttaaattgttaacgaatgtt 27313662  T
Q  101 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27313661 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 27313617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 24773542 - 24773397
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||| ||||||    
T  24773542 tgtcatttcatcatcttattctattcacagagatctataataatgagagataatattatataatgtaatgttca-tttttttaaattgttaacgaatgtt 24773444  T
Q  101 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagtat 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24773443 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagtat 24773397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 35350088 - 35350233
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnn-aaattgttaacaaatgt 99  Q
    |||||| ||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||| ||||||||         ||||||||||| |||||    
T  35350088 tgtcatttcatcatcttactccattcacaaagatttataataatgagagacaatattatataatgcaatgttcatttttttttaaattgttaacgaatgt 35350187  T
Q  100 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35350188 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 35350233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 33826522 - 33826378
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||    
T  33826522 tgtcatttcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttca-tttttttaaattgttaacgaatgtt 33826424  T
Q  101 tttcatctcataaaacccgtgcggcgcacgggttagtaatctagta 146  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  33826423 tttcatctcataaaacccgtgcggcgcatgggttagtaatctagta 33826378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39878946 - 39879092
Alignment:
Q  1 tgtcatatcatcatcttattctattcacag-agatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgt 99  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||    
T  39878946 tgtcatttcatcatcttattctattcacgggagatctataataatgagagacaatattatataatgtaatgttcatttttttgaaatcgttaacaaatgt 39879045  T
Q  100 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagta 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39879046 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagta 39879092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 2416419 - 2416271
Alignment:
Q  3 tcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaa-ttgttaacaaatgttt 101  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||        ||| |||||||| |||||||    
T  2416419 tcatttcatcatcttattctactcacggagatctataataatgagagacaatattatataatgtaatgttcattttttttaaaattgttaacgaatgttt 2416320  T
Q  102 ttcatctcataaaacccgtgcggcgcacgggttagtaatctagtattta 150  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2416319 ttcatctcataaaacccgtgcggcgcacgggttagtaatctagttttta 2416271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 39348656 - 39348803
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnn---aaattgttaacaaat 97  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||           ||||||||||| |||    
T  39348656 tgtcatttcatcatcttactctattcacagagatttataataatgagagacaatattatataatgcaatgttcatttttttttttaaattgttaacgaat 39348755  T
Q  98 gtttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39348756 gtttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 39348803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 27018742 - 27018889
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttca-nnnnnnnnaaattgttaacaaatgt 99  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||    
T  27018742 tgtcatttcatcatcttattctattcatagagatctataataatgagagacaatattatataatgtaatgttcatttttttttaaattgttaacgaatgt 27018841  T
Q  100 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagtat 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27018842 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagtat 27018889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 9061886 - 9062028
Alignment:
Q  3 tcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnnaaattgttaacaaatgtttt 102  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||| ||||||||    
T  9061886 tcatttcatcatcttattctattcacggagatctataataatgagagataatattatataatgtaatgttcattttttttaaattgttaacgaatgtttt 9061985  T
Q  103 tcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9061986 tcatctcataaaacccgtgcggcgcacgggttagtaatctagt 9062028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 42758530 - 42758484
Alignment:
Q  107 ctcataaaacccgtgcggcgcacgggttagtaatctagtatttatat 153  Q
    |||||||||||||||||||| |||||| || |||||||||| |||||    
T  42758530 ctcataaaacccgtgcggcgtacgggtcagaaatctagtatatatat 42758484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 38443780 - 38443923
Alignment:
Q  3 tcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttca-nnnnnnnnaaattgttaacaaatgttt 101  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||||    
T  38443780 tcatttcatcatcttattctattcacggagatctataataatgagagacaatattatataatgtaatgttcatttttttttaaattgttaacgaatgttt 38443879  T
Q  102 ttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38443880 ttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 38443923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4014499 - 4014645
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttca-nnnnnnnnaaattgttaacaaatgt 99  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||         ||||||||||| |||||    
T  4014499 tgtcatttcatcatcttactctattcacagagatttataataatgagagacaatattatataatgcaatgttcatttttttttaaattgttaacgaatgt 4014598  T
Q  100 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagta 146  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  4014599 ttttcatctcttaaaacccgtgcggcgcacgggttagtaatctagta 4014645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 15197755 - 15197684
Alignment:
Q  3 tcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttca 74  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15197755 tcatttcatcatcttattctattcacggagatctataataatgagagacaatattatataatgtaatgttca 15197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25880894 - 25880957
Alignment:
Q  1 tgtcatatcatcatcttattctattcaca--gagatctataataatgagagacaatattatata 62  Q
    |||||| ||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||    
T  25880894 tgtcatttcatcatcttactctattcacaaagagatctataataataagagacaatattatata 25880957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 25882691 - 25882754
Alignment:
Q  84 aattgttaacaaatgtttttcatctcataaaacccgtgcggcgcacgggttagtaatctagtat 147  Q
    |||||||| ||||||||| |||||||||||||| |||||||||  |||||||| ||||||||||    
T  25882691 aattgttagcaaatgtttgtcatctcataaaactcgtgcggcgtgcgggttagcaatctagtat 25882754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 921110 - 921255
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttca-nnnnnnnnaaattgttaacaaatgt 99  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| |||||    
T  921110 tgtcatttcatcatcttattctattcacggagatctataataatgagagacaatattatataatgtaatgttcattttttttaaaattgttaacgaatgt 921209  T
Q  100 ttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  921210 ttttcatctcataaaactcgtgcggcgcacgggttagtaatctagt 921255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2277165 - 2277312
Alignment:
Q  1 tgtcatatcatcatcttattctattcacagagatctataataatgagagacaatattatataatgtaatgttcannnnnnnn---aaattgttaacaaat 97  Q
    |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||           ||||||||||| |||    
T  2277165 tgtcatttcatcatcttactctattcacagagatttataataatgagagacaatattatataatgcaatgttcatttttttttttaaattgttaacgaat 2277264  T
Q  98 gtttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2277265 gtttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 2277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 26455443 - 26455404
Alignment:
Q  177 atgtacttagagagaatgtaaatatataaatgaaaatctt 216  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  26455443 atgtacttagggacaatgtaaatatataaatgaaaatctt 26455404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 174
Target Start/End: Complemental strand, 26455488 - 26455459
Alignment:
Q  145 tatttatatcatttcatgcattttatttta 174  Q
    ||||||||||||||||||||||||||||||    
T  26455488 tatttatatcatttcatgcattttatttta 26455459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 11095 - 10948
Alignment:
Q  1 tgtcatatcatcatctt-attctattcacagagatctataataatgagagacaatattatataatgtaatgttc--annnnnnnnaaattgttaacaaat 97  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||| |||    
T  11095 tgtcatttcatcatctttattctattcacagagatctataataatgagagacaatattatataatgtaatgttctattttttttaaaattgttaacgaat 10996  T
Q  98 gtttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 145  Q
     |||||||||||||||||||||||||||||||||||||||||||||||    
T  10995 atttttcatctcataaaacccgtgcggcgcacgggttagtaatctagt 10948  T

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