View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6302_high_21 (Length: 244)

Name: NF6302_high_21
Description: NF6302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6302_high_21
NF6302_high_21
[»] chr8 (5 HSPs)
chr8 (19-232)||(12930833-12931048)
chr8 (27-232)||(12935579-12935786)
chr8 (162-232)||(26504985-26505055)
chr8 (118-230)||(15588948-15589060)
chr8 (35-80)||(26504850-26504895)
[»] chr4 (9 HSPs)
chr4 (19-232)||(14174094-14174310)
chr4 (19-232)||(28611560-28611776)
chr4 (26-232)||(14178848-14179057)
chr4 (26-232)||(28606805-28607014)
chr4 (27-232)||(44161743-44161949)
chr4 (27-232)||(11104625-11104829)
chr4 (26-232)||(48826701-48826905)
chr4 (54-224)||(48708086-48708256)
chr4 (139-232)||(24726288-24726381)
[»] chr1 (1 HSPs)
chr1 (27-232)||(34907296-34907503)
[»] chr5 (5 HSPs)
chr5 (27-232)||(29106878-29107083)
chr5 (26-232)||(42910992-42911197)
chr5 (19-107)||(38994691-38994779)
chr5 (119-209)||(38997230-38997320)
chr5 (19-82)||(38997130-38997193)
[»] chr7 (7 HSPs)
chr7 (27-232)||(37040426-37040634)
chr7 (19-232)||(15290385-15290602)
chr7 (27-232)||(12099156-12099361)
chr7 (27-109)||(12084669-12084751)
chr7 (175-232)||(12082171-12082227)
chr7 (120-232)||(2757307-2757418)
chr7 (23-87)||(2757209-2757273)
[»] chr2 (1 HSPs)
chr2 (26-232)||(8539342-8539549)
[»] chr3 (2 HSPs)
chr3 (19-109)||(51302937-51303027)
chr3 (118-154)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (27-209)||(2100199-2100379)
chr6 (202-232)||(2100723-2100753)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 12931048 - 12930833
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||             
T  12931048 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaa 12930949  T
Q  118 -tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat 216  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930948 atgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat 12930849  T
Q  217 attctctccactctct 232  Q
    ||||||||||||||||    
T  12930848 attctctccactctct 12930833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 12935786 - 12935579
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||          |||||||    
T  12935786 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 12935687  T
Q  125 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935686 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T
Q  225 cactctct 232  Q
    ||||||||    
T  12935586 cactctct 12935579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 232
Target Start/End: Original strand, 26504985 - 26505055
Alignment:
Q  162 aaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 232  Q
    |||||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
Q  118 tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 217  Q
    |||||| |||||||||   || ||||||||||| || |||| |||||| || | |||||||||  ||||||||| |||| ||| ||| |||||||||| |    
T  15589060 tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca 15588961  T
Q  218 ttctctccactct 230  Q
    || ||||||||||    
T  15588960 ttttctccactct 15588948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
Q  35 tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa 80  Q
    |||||||| |||| | ||||||||||||||||| ||||||||||||    
T  26504850 tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa 26504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 14174310 - 14174094
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||              
T  14174310 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaa 14174211  T
Q  118 --tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 215  Q
      ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174210 aatgaacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 14174111  T
Q  216 tattctctccactctct 232  Q
    |||||||||||||||||    
T  14174110 tattctctccactctct 14174094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 28611560 - 28611776
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn- 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||             
T  28611560 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaa 28611659  T
Q  118 --tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 215  Q
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611660 aatgaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaa 28611759  T
Q  216 tattctctccactctct 232  Q
    |||||||||||||||||    
T  28611760 tattctctccactctct 28611776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 14179057 - 14178848
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||    
T  14179057 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac 14178958  T
Q  123 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 222  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178957 accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 14178858  T
Q  223 tccactctct 232  Q
    ||||||||||    
T  14178857 tccactctct 14178848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 28606805 - 28607014
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaac 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||           | |||    
T  28606805 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac 28606904  T
Q  123 accaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 222  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606905 accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc 28607004  T
Q  223 tccactctct 232  Q
    ||||||||||    
T  28607005 tccactctct 28607014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 44161949 - 44161743
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  44161949 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 44161850  T
Q  124 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 223  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  44161849 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattaca--attctct 44161752  T
Q  224 ccactctct 232  Q
    |||||||||    
T  44161751 ccactctct 44161743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 11104829 - 11104625
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||    
T  11104829 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca 11104730  T
Q  127 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 226  Q
    ||||||||| | ||||| |||||||||  |||||  ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  11104729 atatttaacatagaaaatcctctaatatcgaggg-taaaccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca 11104631  T
Q  227 ctctct 232  Q
    ||||||    
T  11104630 ctctct 11104625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 48826701 - 48826905
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnnt-gaacac 124  Q
    |||||||| |||||||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||||||||||||||          ||||||    
T  48826701 ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac 48826798  T
Q  125 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 224  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  48826799 caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt 48826897  T
Q  225 cactctct 232  Q
    | ||||||    
T  48826898 cgctctct 48826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 48708086 - 48708256
Alignment:
Q  54 tgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacaccaatatttaacgtggaaaaccctctaata 153  Q
    |||||||||||||||||||||  |||||| |||| ||||| || ||||| ||| ||        | || ||||||||||||| || ||||| || |||||    
T  48708086 tgtaaattaaaattccaaaatataaaagaaattgaatcttacaacgcagtggtggcgataaaattaaataccaatatttaacatgaaaaactctataata 48708185  T
Q  154 ctgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 224  Q
    || || ||||||||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708186 ctaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 24726288 - 24726381
Alignment:
Q  139 gaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 232  Q
    ||||||| |||||||   |||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 34907503 - 34907296
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn--tgaacac 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          |||||||    
T  34907503 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac 34907404  T
Q  125 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 224  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907403 caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T
Q  225 cactctct 232  Q
    ||||||||    
T  34907303 cactctct 34907296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 29106878 - 29107083
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 126  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        |||||||||    
T  29106878 tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca 29106977  T
Q  127 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 29107077  T
Q  227 ctctct 232  Q
    ||||||    
T  29107078 ctctct 29107083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 42910992 - 42911197
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacc 125  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||| | |        ||||||||    
T  42910992 ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc 42911091  T
Q  126 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc 225  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  42911092 aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccg-aaaatattccactatatttaagaatattacaatattctctcc 42911190  T
Q  226 actctct 232  Q
    |||||||    
T  42911191 actctct 42911197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 38994691 - 38994779
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggta 107  Q
    ||||||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||||  | |||||||||||||| |||||||||    
T  38994691 ataccacttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta 38994779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
Q  119 gaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 209  Q
    ||||| |||||||| |||| |||||||||||||||  ||  ||||||| |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997230 gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 38997130 - 38997193
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga 82  Q
    |||| |||||||||| |||| | |||||| ||  |||||||||||||||||| |||||||||||    
T  38997130 atactacttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga 38997193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 37040426 - 37040634
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn---tgaaca 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||    
T  37040426 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca 37040525  T
Q  124 ccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct 223  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37040526 ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct 37040625  T
Q  224 ccactctct 232  Q
    |||||||||    
T  37040626 ccactctct 37040634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 15290602 - 15290385
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcgcagcggtagcnnnnnnnn 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||            
T  15290602 ataccacttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaa 15290503  T
Q  118 ---tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattaca 214  Q
       ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||||||| ||||||||||||    
T  15290502 aaatgaacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattaca 15290403  T
Q  215 atattctctccactctct 232  Q
    ||||||||||||||||||    
T  15290402 atattctctccactctct 15290385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 12099361 - 12099156
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnntgaacacca 126  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || || ||||        |||| | ||    
T  12099361 tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca 12099262  T
Q  127 atatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 226  Q
    |||||| ||||| |||||||||||||   || |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  12099261 atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca 12099162  T
Q  227 ctctct 232  Q
    ||||||    
T  12099161 ctctct 12099156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 109  Q
    |||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| |||||| |||||||    
T  12084751 tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc 12084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 12082227 - 12082171
Alignment:
Q  175 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 232  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctct 12082171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 2757307 - 2757418
Alignment:
Q  120 aacaccaatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 219  Q
    |||||||||||||||  || ||| |||| |||| || | |||||||||| | |||||| |  ||||| |||||||||||||| || |||||| || ||||    
T  2757307 aacaccaatatttaatatgaaaacccctttaatgcttaaggaaaaaccatgagacaaattttgaaaa-tattccactatatttaaaaatattgcactatt 2757405  T
Q  220 ctctccactctct 232  Q
    |||||||||||||    
T  2757406 ctctccactctct 2757418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 2757209 - 2757273
Alignment:
Q  23 cacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg 87  Q
    ||||||||| | || |||||||||   ||||||||||||||||||||||||| ||||||| ||||    
T  2757209 cacttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg 2757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 8539549 - 8539342
Alignment:
Q  26 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcnnnnnnnn-tgaacac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |         ||||||     
T  8539549 ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat 8539450  T
Q  125 caatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 224  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  8539449 caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T
Q  225 cactctct 232  Q
    ||||||||    
T  8539349 cactctct 8539342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 51303027 - 51302937
Alignment:
Q  19 ataccacttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagc 109  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  51303027 ataccacttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc 51302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
Q  118 tgaacaccaatatttaacgtggaaaaccctctaatac 154  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302344 tgaacaccaatatttaacgtggaaaaccctctaatac 51302308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
Q  27 tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcgcagcggtagcnnnnnnnntgaacacc 125  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | ||||||| || || ||          |||||| |    
T  2100199 tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc 2100298  T
Q  126 aatatttaacgtggaaaaccctctaatactgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaata 209  Q
    ||||||||| |||||||||||| ||||| |||| |||||||   ||| ||||||||||||||||||||||||||||||||||||    
T  2100299 aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 232
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  202 aaagaatattacaatattctctccactctct 232  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University